Hb_001059_060

Information

Type -
Description -
Location Contig1059: 69313-73352
Sequence    

Annotation

kegg
ID rcu:RCOM_1095830
description riboflavin kinase/fmn adenylyltransferase, putative (EC:3.1.3.18 2.7.1.26)
nr
ID XP_012091494.1
description PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
swissprot
ID Q84MD8
description Bifunctional riboflavin kinase/FMN phosphatase OS=Arabidopsis thaliana GN=FHY PE=1 SV=1
trembl
ID A0A067JAP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21357 PE=4 SV=1
Gene Ontology
ID GO:0008531
description bifunctional riboflavin kinase fmn phosphatase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01934: 70117-70611 , PASA_asmbl_01935: 71386-71712 , PASA_asmbl_01936: 70885-73324 , PASA_asmbl_01937: 71158-71269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_060 0.0 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
2 Hb_009078_020 0.0546750227 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
3 Hb_000853_330 0.0716064086 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
4 Hb_004052_110 0.0727782259 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
5 Hb_011188_010 0.0736122871 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
6 Hb_001998_210 0.0775605951 - - unnamed protein product [Coffea canephora]
7 Hb_001439_070 0.0890242216 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_001999_320 0.0914522498 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
9 Hb_002259_220 0.0915221213 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
10 Hb_000487_370 0.0959096882 - - -
11 Hb_000094_150 0.0965353683 - - -
12 Hb_010407_030 0.1000322221 - - PREDICTED: casein kinase I-like [Jatropha curcas]
13 Hb_000197_180 0.1006558023 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
14 Hb_000227_320 0.1035564139 - - unnamed protein product [Vitis vinifera]
15 Hb_001514_240 0.1038145142 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
16 Hb_000594_060 0.1065189428 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
17 Hb_001484_090 0.1069439277 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_006949_060 0.1083049771 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_029695_120 0.1090209752 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
20 Hb_001414_010 0.109969725 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_001059_060 Hb_001059_060 Hb_009078_020 Hb_009078_020 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_009078_020--Hb_011188_010 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_009078_020--Hb_000853_330 Hb_000197_180 Hb_000197_180 Hb_000853_330--Hb_000197_180 Hb_010407_030 Hb_010407_030 Hb_000853_330--Hb_010407_030 Hb_006949_060 Hb_006949_060 Hb_000853_330--Hb_006949_060 Hb_000375_060 Hb_000375_060 Hb_000853_330--Hb_000375_060 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_004052_110--Hb_011188_010 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001998_210--Hb_001439_070 Hb_000300_030 Hb_000300_030 Hb_001998_210--Hb_000300_030 Hb_000617_250 Hb_000617_250 Hb_001439_070--Hb_000617_250 Hb_003661_010 Hb_003661_010 Hb_001439_070--Hb_003661_010 Hb_001439_070--Hb_004052_110 Hb_001421_090 Hb_001421_090 Hb_001439_070--Hb_001421_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76909 9.94912 11.2269 10.9358 1.90146 2.72926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39358 1.8072 0.900288 6.51269 11.5565

CAGE analysis