Hb_000197_180

Information

Type -
Description -
Location Contig197: 193844-200741
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16470g
description POPTRDRAFT_648629; dihydrofolate reductase-thymidylate synthase family protein
nr
ID XP_012067239.1
description PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
swissprot
ID P45350
description Bifunctional dihydrofolate reductase-thymidylate synthase OS=Daucus carota PE=2 SV=1
trembl
ID A0A067LBA7
description Bifunctional dihydrofolate reductase-thymidylate synthase OS=Jatropha curcas GN=JCGZ_26783 PE=3 SV=1
Gene Ontology
ID GO:0004146
description thymidylate synthase 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19769: 198075-199150 , PASA_asmbl_19770: 198771-199150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_180 0.0 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
2 Hb_000853_330 0.0817305402 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
3 Hb_002739_120 0.0820561752 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
4 Hb_000979_140 0.0893062199 - - kinase family protein [Populus trichocarpa]
5 Hb_004375_110 0.0893452567 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
6 Hb_060094_010 0.0910835814 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
7 Hb_002349_030 0.0912027087 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013726_050 0.0927967491 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
9 Hb_000815_310 0.0961854434 - - protein kinase, putative [Ricinus communis]
10 Hb_001159_060 0.0975334103 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
11 Hb_001059_060 0.1006558023 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
12 Hb_009078_020 0.1009759363 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_000098_180 0.1017392333 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
14 Hb_004218_130 0.1027281883 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
15 Hb_002304_050 0.1027585801 - - pyruvate kinase, putative [Ricinus communis]
16 Hb_003777_130 0.1029873931 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
17 Hb_000015_090 0.103133614 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
18 Hb_001250_050 0.1035052909 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
19 Hb_009372_020 0.1042092751 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_003777_030 0.1045610493 - - Exocyst complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000197_180 Hb_000197_180 Hb_000853_330 Hb_000853_330 Hb_000197_180--Hb_000853_330 Hb_002739_120 Hb_002739_120 Hb_000197_180--Hb_002739_120 Hb_000979_140 Hb_000979_140 Hb_000197_180--Hb_000979_140 Hb_004375_110 Hb_004375_110 Hb_000197_180--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_000197_180--Hb_060094_010 Hb_002349_030 Hb_002349_030 Hb_000197_180--Hb_002349_030 Hb_001059_060 Hb_001059_060 Hb_000853_330--Hb_001059_060 Hb_009078_020 Hb_009078_020 Hb_000853_330--Hb_009078_020 Hb_010407_030 Hb_010407_030 Hb_000853_330--Hb_010407_030 Hb_006949_060 Hb_006949_060 Hb_000853_330--Hb_006949_060 Hb_000375_060 Hb_000375_060 Hb_000853_330--Hb_000375_060 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_001085_080 Hb_001085_080 Hb_002739_120--Hb_001085_080 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_009372_020 Hb_009372_020 Hb_004375_110--Hb_009372_020 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_008165_020 Hb_008165_020 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_002965_050 Hb_002965_050 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070 Hb_000711_010 Hb_000711_010 Hb_002349_030--Hb_000711_010 Hb_002349_030--Hb_060094_010 Hb_002349_030--Hb_001729_020 Hb_000012_240 Hb_000012_240 Hb_002349_030--Hb_000012_240 Hb_002046_060 Hb_002046_060 Hb_002349_030--Hb_002046_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30308 14.1562 16.5112 18.6268 3.27281 4.61371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58166 3.7965 3.75905 8.57627 12.1922

CAGE analysis