Hb_000015_090

Information

Type -
Description -
Location Contig15: 81961-88288
Sequence    

Annotation

kegg
ID rcu:RCOM_0464870
description amino acid binding protein, putative
nr
ID XP_012089514.1
description PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
swissprot
ID O80644
description ACT domain-containing protein ACR9 OS=Arabidopsis thaliana GN=ACR9 PE=2 SV=1
trembl
ID A0A067L999
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01492 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12503: 83039-87068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_090 0.0 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
2 Hb_000452_030 0.057788163 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
3 Hb_000664_090 0.0776556371 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
4 Hb_004375_110 0.0804493457 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
5 Hb_003725_010 0.0824579811 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
6 Hb_000015_200 0.0852944176 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
7 Hb_000979_140 0.087094502 - - kinase family protein [Populus trichocarpa]
8 Hb_024714_070 0.08835232 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
9 Hb_002876_210 0.0934972455 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
10 Hb_003581_130 0.0946061667 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_008165_020 0.094683991 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
12 Hb_003124_270 0.0954051958 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
13 Hb_000711_010 0.0974140541 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
14 Hb_003687_130 0.0990868238 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
15 Hb_002259_170 0.1009472702 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
16 Hb_001507_050 0.1011772846 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000844_050 0.1012516448 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
18 Hb_001998_210 0.1031066254 - - unnamed protein product [Coffea canephora]
19 Hb_000197_180 0.103133614 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
20 Hb_013358_060 0.1031753103 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_000015_090 Hb_000015_090 Hb_000452_030 Hb_000452_030 Hb_000015_090--Hb_000452_030 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000015_090--Hb_004375_110 Hb_003725_010 Hb_003725_010 Hb_000015_090--Hb_003725_010 Hb_000015_200 Hb_000015_200 Hb_000015_090--Hb_000015_200 Hb_000979_140 Hb_000979_140 Hb_000015_090--Hb_000979_140 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_002259_170 Hb_002259_170 Hb_000452_030--Hb_002259_170 Hb_000452_030--Hb_000979_140 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_000664_090--Hb_004375_110 Hb_048476_080 Hb_048476_080 Hb_000664_090--Hb_048476_080 Hb_008165_020 Hb_008165_020 Hb_000664_090--Hb_008165_020 Hb_001507_050 Hb_001507_050 Hb_000664_090--Hb_001507_050 Hb_000844_050 Hb_000844_050 Hb_000664_090--Hb_000844_050 Hb_009372_020 Hb_009372_020 Hb_004375_110--Hb_009372_020 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_004375_110--Hb_008165_020 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_013358_060 Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_003725_010--Hb_000270_700 Hb_024714_070 Hb_024714_070 Hb_003725_010--Hb_024714_070 Hb_012799_150 Hb_012799_150 Hb_003725_010--Hb_012799_150 Hb_017914_010 Hb_017914_010 Hb_003725_010--Hb_017914_010 Hb_003581_130 Hb_003581_130 Hb_000015_200--Hb_003581_130 Hb_000015_200--Hb_001507_050 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_001414_010 Hb_001414_010 Hb_000015_200--Hb_001414_010 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31764 9.46324 7.27545 7.12914 1.91521 1.82293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46215 2.86355 2.71336 4.57186 8.19357

CAGE analysis