Hb_003581_130

Information

Type -
Description -
Location Contig3581: 94998-103196
Sequence    

Annotation

kegg
ID rcu:RCOM_0698010
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.25)
nr
ID XP_002520138.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID B9S2B9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0698010 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g15080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36945: 95406-103120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_130 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000015_200 0.0732764377 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
3 Hb_000452_030 0.0941367228 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
4 Hb_000015_090 0.0946061667 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
5 Hb_000340_220 0.0951033063 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002349_030 0.0981284973 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000369_080 0.0988166076 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
8 Hb_001699_170 0.0988716201 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003124_270 0.0994564373 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
10 Hb_003687_130 0.0995391809 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
11 Hb_005588_120 0.1000002535 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001956_060 0.1008453769 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
13 Hb_001865_100 0.1068070979 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
14 Hb_003680_020 0.1083377222 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_004884_090 0.1083454943 - - importin beta-1, putative [Ricinus communis]
16 Hb_000111_370 0.1084553113 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
17 Hb_031089_050 0.1092528529 - - kinase, putative [Ricinus communis]
18 Hb_002046_060 0.1098290639 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
19 Hb_000340_360 0.1100072554 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
20 Hb_000007_410 0.1101003942 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_003581_130 Hb_003581_130 Hb_000015_200 Hb_000015_200 Hb_003581_130--Hb_000015_200 Hb_000452_030 Hb_000452_030 Hb_003581_130--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_003581_130--Hb_000015_090 Hb_000340_220 Hb_000340_220 Hb_003581_130--Hb_000340_220 Hb_002349_030 Hb_002349_030 Hb_003581_130--Hb_002349_030 Hb_000369_080 Hb_000369_080 Hb_003581_130--Hb_000369_080 Hb_001507_050 Hb_001507_050 Hb_000015_200--Hb_001507_050 Hb_004375_110 Hb_004375_110 Hb_000015_200--Hb_004375_110 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_001414_010 Hb_001414_010 Hb_000015_200--Hb_001414_010 Hb_000015_200--Hb_000452_030 Hb_000452_030--Hb_000015_090 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_002259_170 Hb_002259_170 Hb_000452_030--Hb_002259_170 Hb_000979_140 Hb_000979_140 Hb_000452_030--Hb_000979_140 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_000015_090--Hb_004375_110 Hb_003725_010 Hb_003725_010 Hb_000015_090--Hb_003725_010 Hb_000015_090--Hb_000015_200 Hb_000015_090--Hb_000979_140 Hb_000804_020 Hb_000804_020 Hb_000340_220--Hb_000804_020 Hb_005588_120 Hb_005588_120 Hb_000340_220--Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_000340_220--Hb_004129_010 Hb_001865_100 Hb_001865_100 Hb_000340_220--Hb_001865_100 Hb_000007_410 Hb_000007_410 Hb_000340_220--Hb_000007_410 Hb_000711_010 Hb_000711_010 Hb_002349_030--Hb_000711_010 Hb_060094_010 Hb_060094_010 Hb_002349_030--Hb_060094_010 Hb_001729_020 Hb_001729_020 Hb_002349_030--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_002349_030--Hb_000197_180 Hb_000012_240 Hb_000012_240 Hb_002349_030--Hb_000012_240 Hb_002046_060 Hb_002046_060 Hb_002349_030--Hb_002046_060 Hb_001221_300 Hb_001221_300 Hb_000369_080--Hb_001221_300 Hb_000340_360 Hb_000340_360 Hb_000369_080--Hb_000340_360 Hb_013399_090 Hb_013399_090 Hb_000369_080--Hb_013399_090 Hb_014006_010 Hb_014006_010 Hb_000369_080--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000369_080--Hb_003124_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96265 8.74924 6.18054 8.21404 0.948043 1.60537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63855 1.50413 2.91963 5.51433 8.3992

CAGE analysis