Hb_000369_080

Information

Type -
Description -
Location Contig369: 93042-99746
Sequence    

Annotation

kegg
ID rcu:RCOM_1298320
description replication factor C / DNA polymerase III gamma-tau subunit, putative (EC:2.7.7.7)
nr
ID XP_002519367.1
description replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
swissprot
ID O64728
description Protein STICHEL OS=Arabidopsis thaliana GN=STI PE=1 SV=2
trembl
ID B9S048
description Replication factor C / DNA polymerase III gamma-tau subunit, putative OS=Ricinus communis GN=RCOM_1298320 PE=4 SV=1
Gene Ontology
ID GO:0009360
description stichel family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37994: 93154-97761 , PASA_asmbl_37995: 97874-98043 , PASA_asmbl_37996: 99046-99151 , PASA_asmbl_37998: 99668-99867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_080 0.0 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
2 Hb_001221_300 0.071276212 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
3 Hb_000340_360 0.0844695292 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
4 Hb_003581_130 0.0988166076 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_013399_090 0.1018555108 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
6 Hb_014006_010 0.1021534429 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
7 Hb_003124_270 0.1046002123 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
8 Hb_000167_120 0.1047389016 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
9 Hb_000025_500 0.1070386088 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_001439_070 0.1098037692 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_000844_050 0.1116258948 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
12 Hb_004994_350 0.1124956297 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
13 Hb_001341_010 0.1138694341 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
14 Hb_004586_090 0.1150790139 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
15 Hb_002078_470 0.1157131053 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
16 Hb_004884_090 0.1166732765 - - importin beta-1, putative [Ricinus communis]
17 Hb_005181_050 0.1181286807 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
18 Hb_002805_090 0.1200914303 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_001951_100 0.1224531748 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
20 Hb_000586_020 0.1227610993 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]

Gene co-expression network

sample Hb_000369_080 Hb_000369_080 Hb_001221_300 Hb_001221_300 Hb_000369_080--Hb_001221_300 Hb_000340_360 Hb_000340_360 Hb_000369_080--Hb_000340_360 Hb_003581_130 Hb_003581_130 Hb_000369_080--Hb_003581_130 Hb_013399_090 Hb_013399_090 Hb_000369_080--Hb_013399_090 Hb_014006_010 Hb_014006_010 Hb_000369_080--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000369_080--Hb_003124_270 Hb_000025_500 Hb_000025_500 Hb_001221_300--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_001221_300--Hb_004041_030 Hb_001439_070 Hb_001439_070 Hb_001221_300--Hb_001439_070 Hb_000376_210 Hb_000376_210 Hb_001221_300--Hb_000376_210 Hb_021079_020 Hb_021079_020 Hb_001221_300--Hb_021079_020 Hb_000340_360--Hb_014006_010 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_000340_360--Hb_013399_090 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_000015_200 Hb_000015_200 Hb_003581_130--Hb_000015_200 Hb_000452_030 Hb_000452_030 Hb_003581_130--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_003581_130--Hb_000015_090 Hb_000340_220 Hb_000340_220 Hb_003581_130--Hb_000340_220 Hb_002349_030 Hb_002349_030 Hb_003581_130--Hb_002349_030 Hb_013399_090--Hb_014006_010 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15781 5.22233 3.90135 3.92209 0.609763 1.85074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.803511 0.691357 1.71666 3.08878 7.17386

CAGE analysis