Hb_004041_030

Information

Type -
Description -
Location Contig4041: 31315-41770
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001443mg
description hypothetical protein
nr
ID XP_011027002.1
description PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
swissprot
ID F4HT41
description Probable S-adenosylmethionine carrier 2, chloroplastic OS=Arabidopsis thaliana GN=SAMC2 PE=2 SV=1
trembl
ID M5X5X3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001443mg PE=3 SV=1
Gene Ontology
ID GO:0009507
description mitochondrial substrate carrier family protein c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40100: 31303-38496 , PASA_asmbl_40103: 41181-41649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_030 0.0 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
2 Hb_002150_020 0.0480784771 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_005305_020 0.0818859303 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
4 Hb_001221_300 0.088762101 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
5 Hb_052946_010 0.0911532364 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
6 Hb_000025_500 0.0923024284 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_001405_080 0.0956158124 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
8 Hb_032631_070 0.0964949565 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_005571_010 0.0965114011 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
10 Hb_000579_040 0.100826056 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
11 Hb_004111_030 0.1008591608 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
12 Hb_000066_040 0.1015389042 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_001009_260 0.1016318873 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000510_190 0.1022481509 - - glutathione reductase [Hevea brasiliensis]
15 Hb_018043_020 0.1032190448 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
16 Hb_055690_010 0.1043365518 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_008616_040 0.1051405702 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
18 Hb_021409_190 0.1082987735 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
19 Hb_001425_010 0.1096678032 - - sugar transporter, putative [Ricinus communis]
20 Hb_004672_020 0.1100934783 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_004041_030 Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_004041_030--Hb_002150_020 Hb_005305_020 Hb_005305_020 Hb_004041_030--Hb_005305_020 Hb_001221_300 Hb_001221_300 Hb_004041_030--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_004041_030--Hb_052946_010 Hb_000025_500 Hb_000025_500 Hb_004041_030--Hb_000025_500 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080 Hb_005571_010 Hb_005571_010 Hb_002150_020--Hb_005571_010 Hb_055690_010 Hb_055690_010 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_002150_020--Hb_005305_020 Hb_005305_020--Hb_055690_010 Hb_003124_120 Hb_003124_120 Hb_005305_020--Hb_003124_120 Hb_004672_020 Hb_004672_020 Hb_005305_020--Hb_004672_020 Hb_001307_100 Hb_001307_100 Hb_005305_020--Hb_001307_100 Hb_000369_080 Hb_000369_080 Hb_001221_300--Hb_000369_080 Hb_001221_300--Hb_000025_500 Hb_001439_070 Hb_001439_070 Hb_001221_300--Hb_001439_070 Hb_000376_210 Hb_000376_210 Hb_001221_300--Hb_000376_210 Hb_021079_020 Hb_021079_020 Hb_001221_300--Hb_021079_020 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_052946_010--Hb_000025_500 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_003549_050 Hb_003549_050 Hb_001405_080--Hb_003549_050 Hb_004111_030 Hb_004111_030 Hb_001405_080--Hb_004111_030 Hb_001405_080--Hb_002150_020 Hb_001405_080--Hb_052946_010 Hb_002811_190 Hb_002811_190 Hb_001405_080--Hb_002811_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25804 6.10569 7.53059 8.34361 1.91662 2.04416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82566 2.86304 3.22761 6.23618 18.8416

CAGE analysis