Hb_003029_140

Information

Type -
Description -
Location Contig3029: 116999-120862
Sequence    

Annotation

kegg
ID rcu:RCOM_1346530
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082926.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
swissprot
ID Q9SIC9
description Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1
trembl
ID A0A067JZS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14049 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31950: 117272-120844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
2 Hb_018043_020 0.0640337029 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
3 Hb_001250_020 0.0755002978 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
4 Hb_008616_040 0.0758186927 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
5 Hb_021409_190 0.0927101068 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
6 Hb_000997_140 0.09563464 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
7 Hb_052946_010 0.0968811105 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
8 Hb_001109_160 0.0971117265 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001425_010 0.0977009692 - - sugar transporter, putative [Ricinus communis]
10 Hb_000640_260 0.1006718576 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
11 Hb_010984_010 0.1012536264 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_159809_090 0.1017990346 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
13 Hb_010757_030 0.1058447328 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_004041_030 0.1157650883 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
15 Hb_014361_110 0.118699335 - - RNA binding protein, putative [Ricinus communis]
16 Hb_004629_030 0.1189759111 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_001890_010 0.1196403588 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_007576_150 0.1202355922 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
19 Hb_001009_260 0.1205480547 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
20 Hb_003077_130 0.1216452557 - - hypothetical protein JCGZ_22476 [Jatropha curcas]

Gene co-expression network

sample Hb_003029_140 Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_003029_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_003029_140--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_003029_140--Hb_008616_040 Hb_021409_190 Hb_021409_190 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_001250_020--Hb_008616_040 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_008616_040--Hb_021409_190 Hb_008616_040--Hb_010984_010 Hb_000640_260 Hb_000640_260 Hb_021409_190--Hb_000640_260 Hb_021409_190--Hb_018043_020 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_028707_110 Hb_028707_110 Hb_000997_140--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000997_140--Hb_003077_130 Hb_003929_220 Hb_003929_220 Hb_000997_140--Hb_003929_220 Hb_000997_140--Hb_018043_020 Hb_000997_140--Hb_001250_020 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.86968 20.0592 24.6166 18.5498 7.44674 7.85486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.3063 6.45471 7.27501 16.9936 74.9944

CAGE analysis