Hb_000640_260

Information

Type -
Description -
Location Contig640: 233288-237201
Sequence    

Annotation

kegg
ID rcu:RCOM_1346530
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082926.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
swissprot
ID Q9SIC9
description Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1
trembl
ID A0A067JZS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14049 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52120: 234087-236293 , PASA_asmbl_52121: 236898-237179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_260 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
2 Hb_001890_010 0.0780528268 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_021409_190 0.0853319884 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
4 Hb_166127_030 0.089573767 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000934_020 0.0991238148 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
6 Hb_000189_250 0.1005134099 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
7 Hb_003029_140 0.1006718576 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
8 Hb_018043_020 0.1046425802 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
9 Hb_002671_130 0.1048398612 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
10 Hb_003124_120 0.1049313242 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
11 Hb_000495_080 0.1096760404 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
12 Hb_002811_190 0.1105482192 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
13 Hb_001009_260 0.1130640281 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
14 Hb_004111_030 0.1134040048 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
15 Hb_159809_090 0.1142348696 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
16 Hb_010757_030 0.1183225143 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_007576_150 0.1190923246 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
18 Hb_163145_030 0.1213972435 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
19 Hb_052946_010 0.1229306259 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
20 Hb_003226_190 0.1239660173 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_260 Hb_000640_260 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000640_260--Hb_000189_250 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_004111_030 Hb_004111_030 Hb_001890_010--Hb_004111_030 Hb_003124_120 Hb_003124_120 Hb_001890_010--Hb_003124_120 Hb_018043_020 Hb_018043_020 Hb_001890_010--Hb_018043_020 Hb_001890_010--Hb_000934_020 Hb_159809_090 Hb_159809_090 Hb_001890_010--Hb_159809_090 Hb_008616_040 Hb_008616_040 Hb_021409_190--Hb_008616_040 Hb_021409_190--Hb_003029_140 Hb_021409_190--Hb_018043_020 Hb_001109_160 Hb_001109_160 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_166127_030--Hb_000189_250 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_166127_030--Hb_000934_020 Hb_166127_030--Hb_021409_190 Hb_000934_020--Hb_000189_250 Hb_007576_150 Hb_007576_150 Hb_000934_020--Hb_007576_150 Hb_000069_490 Hb_000069_490 Hb_000934_020--Hb_000069_490 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_003029_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_003029_140--Hb_001250_020 Hb_003029_140--Hb_008616_040 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50905 2.76665 5.57499 3.53281 1.17286 2.12068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2927 1.21834 3.07552 4.13874 16.5201

CAGE analysis