Hb_001890_010

Information

Type -
Description -
Location Contig1890: 3237-4481
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012073132.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06108 PE=4 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18733: 2689-3880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001890_010 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_000640_260 0.0780528268 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
3 Hb_004111_030 0.0860681111 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
4 Hb_003124_120 0.0921521298 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
5 Hb_018043_020 0.0963695058 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
6 Hb_000934_020 0.1056551857 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
7 Hb_159809_090 0.1091535331 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
8 Hb_010128_020 0.1121835318 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
9 Hb_016461_030 0.1184786443 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_003029_020 0.1185356386 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
11 Hb_002075_030 0.1189847248 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
12 Hb_003029_140 0.1196403588 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
13 Hb_004629_030 0.1206358963 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_007576_150 0.1214162159 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
15 Hb_000579_040 0.1215118666 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
16 Hb_013749_050 0.1227113302 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
17 Hb_014361_110 0.1250450984 - - RNA binding protein, putative [Ricinus communis]
18 Hb_000189_250 0.1251292829 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
19 Hb_001425_010 0.1254912799 - - sugar transporter, putative [Ricinus communis]
20 Hb_001307_100 0.1262202423 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001890_010 Hb_001890_010 Hb_000640_260 Hb_000640_260 Hb_001890_010--Hb_000640_260 Hb_004111_030 Hb_004111_030 Hb_001890_010--Hb_004111_030 Hb_003124_120 Hb_003124_120 Hb_001890_010--Hb_003124_120 Hb_018043_020 Hb_018043_020 Hb_001890_010--Hb_018043_020 Hb_000934_020 Hb_000934_020 Hb_001890_010--Hb_000934_020 Hb_159809_090 Hb_159809_090 Hb_001890_010--Hb_159809_090 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000640_260--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000640_260--Hb_000189_250 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_013749_050 Hb_013749_050 Hb_004111_030--Hb_013749_050 Hb_005571_010 Hb_005571_010 Hb_004111_030--Hb_005571_010 Hb_001105_100 Hb_001105_100 Hb_004111_030--Hb_001105_100 Hb_002150_020 Hb_002150_020 Hb_004111_030--Hb_002150_020 Hb_003355_010 Hb_003355_010 Hb_004111_030--Hb_003355_010 Hb_000816_200 Hb_000816_200 Hb_003124_120--Hb_000816_200 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_016461_030 Hb_016461_030 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030 Hb_018043_020--Hb_003029_140 Hb_018043_020--Hb_159809_090 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_000934_020--Hb_000189_250 Hb_007576_150 Hb_007576_150 Hb_000934_020--Hb_007576_150 Hb_000934_020--Hb_166127_030 Hb_000069_490 Hb_000069_490 Hb_000934_020--Hb_000069_490 Hb_159809_090--Hb_001425_010 Hb_159809_090--Hb_003029_140 Hb_159809_090--Hb_008616_040 Hb_052946_010 Hb_052946_010 Hb_159809_090--Hb_052946_010 Hb_007576_180 Hb_007576_180 Hb_159809_090--Hb_007576_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.485525 1.06466 2.25201 0.961797 0.423502 0.981889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.494758 0.729487 0.88483 1.51241 5.01035

CAGE analysis