Hb_000069_490

Information

Type -
Description -
Location Contig69: 524016-526878
Sequence    

Annotation

kegg
ID rcu:RCOM_0719440
description hypothetical protein
nr
ID XP_002523372.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID B9SBK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0719440 PE=4 SV=1
Gene Ontology
ID GO:0016787
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54248: 524973-527090 , PASA_asmbl_54249: 526791-527071 , PASA_asmbl_54250: 527167-527592
cDNA
(Sanger)
(ID:Location)		 043_J17.ab1: 526102-527084

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_490 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003878_080 0.0616993955 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
3 Hb_024714_080 0.0767989759 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
4 Hb_028707_110 0.0908260067 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
5 Hb_003077_130 0.0915235794 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
6 Hb_010757_030 0.0937854723 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000997_140 0.1064006412 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
8 Hb_000934_020 0.1070266996 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
9 Hb_002282_070 0.1080181524 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
10 Hb_001832_040 0.1107108899 - - conserved hypothetical protein [Ricinus communis]
11 Hb_016760_010 0.1113645925 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_002740_190 0.1128283112 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
13 Hb_004785_070 0.1142253092 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
14 Hb_030131_030 0.1160858374 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
15 Hb_001427_040 0.1176874784 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
16 Hb_000661_090 0.1192867674 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_002671_130 0.121812341 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
18 Hb_000189_250 0.1240010341 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
19 Hb_003777_020 0.1249277861 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
20 Hb_000676_200 0.1260263991 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000069_490 Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_010757_030 Hb_010757_030 Hb_000069_490--Hb_010757_030 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140 Hb_003878_080--Hb_010757_030 Hb_000676_200 Hb_000676_200 Hb_003878_080--Hb_000676_200 Hb_003878_080--Hb_024714_080 Hb_000934_020 Hb_000934_020 Hb_003878_080--Hb_000934_020 Hb_002282_070 Hb_002282_070 Hb_003878_080--Hb_002282_070 Hb_024714_080--Hb_003077_130 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_024714_080--Hb_028707_110 Hb_024714_080--Hb_000997_140 Hb_001437_120 Hb_001437_120 Hb_028707_110--Hb_001437_120 Hb_028707_110--Hb_000997_140 Hb_028707_110--Hb_010757_030 Hb_028707_110--Hb_003077_130 Hb_003929_220 Hb_003929_220 Hb_028707_110--Hb_003929_220 Hb_003077_130--Hb_000997_140 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_010757_030 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_000997_140--Hb_003029_140 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.88915 7.42236 8.778 5.55076 6.36717 6.73283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47443 3.56183 4.45872 6.72414 40.7398

CAGE analysis