Hb_000934_020

Information

Type -
Description -
Location Contig934: 15573-21484
Sequence    

Annotation

kegg
ID rcu:RCOM_0138300
description hypothetical protein
nr
ID XP_012066077.1
description PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
swissprot
ID Q8F7K3
description Ribosome maturation factor RimP OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP PE=3 SV=1
trembl
ID A0A067L3N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25228 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62926: 16636-21011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_020 0.0 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
2 Hb_000189_250 0.0614520208 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
3 Hb_007576_150 0.0895890513 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
4 Hb_000640_260 0.0991238148 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_001890_010 0.1056551857 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_166127_030 0.1058496318 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000069_490 0.1070266996 - - conserved hypothetical protein [Ricinus communis]
8 Hb_036790_120 0.1100340299 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
9 Hb_003878_080 0.1110135283 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
10 Hb_002671_130 0.1160806405 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
11 Hb_000684_280 0.1197519626 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
12 Hb_000661_090 0.1217536307 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
13 Hb_000495_080 0.1236236785 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
14 Hb_024714_080 0.128085032 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_014361_110 0.1299977783 - - RNA binding protein, putative [Ricinus communis]
16 Hb_003124_120 0.1323461429 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
17 Hb_000997_140 0.1375117414 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
18 Hb_003777_020 0.1380436078 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
19 Hb_016461_030 0.139063086 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_006637_080 0.1403135119 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000934_020 Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000934_020--Hb_000189_250 Hb_007576_150 Hb_007576_150 Hb_000934_020--Hb_007576_150 Hb_000640_260 Hb_000640_260 Hb_000934_020--Hb_000640_260 Hb_001890_010 Hb_001890_010 Hb_000934_020--Hb_001890_010 Hb_166127_030 Hb_166127_030 Hb_000934_020--Hb_166127_030 Hb_000069_490 Hb_000069_490 Hb_000934_020--Hb_000069_490 Hb_000189_250--Hb_166127_030 Hb_000189_250--Hb_000640_260 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_007576_150--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_007576_150--Hb_003029_140 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_000640_260--Hb_166127_030 Hb_000640_260--Hb_003029_140 Hb_004111_030 Hb_004111_030 Hb_001890_010--Hb_004111_030 Hb_003124_120 Hb_003124_120 Hb_001890_010--Hb_003124_120 Hb_018043_020 Hb_018043_020 Hb_001890_010--Hb_018043_020 Hb_159809_090 Hb_159809_090 Hb_001890_010--Hb_159809_090 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_166127_030--Hb_021409_190 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_010757_030 Hb_010757_030 Hb_000069_490--Hb_010757_030 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69434 3.01684 5.49442 2.08299 1.23533 2.7063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72165 2.06407 3.12346 2.84507 19.8818

CAGE analysis