Hb_000495_080

Information

Type -
Description -
Location Contig495: 164462-166258
Sequence    

Annotation

kegg
ID tcc:TCM_034554
description Pentatricopeptide repeat (PPR-like) superfamily protein
nr
ID XP_007018302.1
description Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
swissprot
ID Q3EDF8
description Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
trembl
ID A0A061FFM0
description Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao GN=TCM_034554 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pentatricopeptide repeat-containing protein at1g09900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000495_080 0.0 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
2 Hb_000352_220 0.0728063772 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_003226_190 0.095457359 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
4 Hb_008511_140 0.1060923346 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
5 Hb_000189_250 0.106663795 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
6 Hb_007002_010 0.1074457673 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
7 Hb_000640_260 0.1096760404 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
8 Hb_002671_130 0.1151664507 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
9 Hb_000683_080 0.1167970267 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
10 Hb_000676_200 0.1220396071 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
11 Hb_000934_020 0.1236236785 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
12 Hb_007576_150 0.1263655687 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
13 Hb_021409_190 0.1264215197 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
14 Hb_003124_120 0.1273989752 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_000529_140 0.1276153829 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003941_030 0.1276720057 - - Protease ecfE, putative [Ricinus communis]
17 Hb_000684_280 0.1284208651 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
18 Hb_026314_030 0.1308130644 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
19 Hb_002681_080 0.1334639883 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
20 Hb_001009_260 0.1335707239 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000495_080 Hb_000495_080 Hb_000352_220 Hb_000352_220 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_007002_010 Hb_007002_010 Hb_000495_080--Hb_007002_010 Hb_000640_260 Hb_000640_260 Hb_000495_080--Hb_000640_260 Hb_000352_220--Hb_007002_010 Hb_000352_220--Hb_003226_190 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_000529_140 Hb_000529_140 Hb_008511_140--Hb_000529_140 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_008511_140--Hb_001080_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_000934_020 Hb_000934_020 Hb_000189_250--Hb_000934_020 Hb_166127_030 Hb_166127_030 Hb_000189_250--Hb_166127_030 Hb_000189_250--Hb_000640_260 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_000023_210 Hb_000023_210 Hb_007002_010--Hb_000023_210 Hb_011053_020 Hb_011053_020 Hb_007002_010--Hb_011053_020 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_000640_260--Hb_166127_030 Hb_000640_260--Hb_000934_020 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65754 7.03059 8.03441 12.138 3.0272 5.09091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65403 5.54268 8.58696 8.84605 49.9006

CAGE analysis