Hb_030131_030

Information

Type -
Description -
Location Contig30131: 29536-33367
Sequence    

Annotation

kegg
ID rcu:RCOM_1600890
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012073668.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
swissprot
ID Q8L844
description Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1
trembl
ID A0A067KY90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08095 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31730: 29517-30218 , PASA_asmbl_31731: 30275-31215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030131_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
2 Hb_002631_250 0.080948878 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
3 Hb_000676_200 0.0956261238 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
4 Hb_002374_250 0.099399631 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008511_140 0.1107824409 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
6 Hb_000069_490 0.1160858374 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003089_020 0.1224550273 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
8 Hb_001832_040 0.1228685256 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005523_010 0.1233082815 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
10 Hb_000110_270 0.1244853893 - - prp4, putative [Ricinus communis]
11 Hb_005250_030 0.127029346 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
12 Hb_002518_120 0.1276231258 - - hypothetical protein RCOM_0731250 [Ricinus communis]
13 Hb_003475_020 0.1284268428 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
14 Hb_011616_020 0.1312539016 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
15 Hb_052946_010 0.1337440371 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
16 Hb_003878_080 0.1342432682 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
17 Hb_016760_010 0.1360427993 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_015778_060 0.1371659237 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
19 Hb_001890_010 0.1372184728 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_001408_120 0.1377842861 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_030131_030 Hb_030131_030 Hb_002631_250 Hb_002631_250 Hb_030131_030--Hb_002631_250 Hb_000676_200 Hb_000676_200 Hb_030131_030--Hb_000676_200 Hb_002374_250 Hb_002374_250 Hb_030131_030--Hb_002374_250 Hb_008511_140 Hb_008511_140 Hb_030131_030--Hb_008511_140 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_003089_020 Hb_003089_020 Hb_030131_030--Hb_003089_020 Hb_002631_250--Hb_000676_200 Hb_001790_080 Hb_001790_080 Hb_002631_250--Hb_001790_080 Hb_003475_020 Hb_003475_020 Hb_002631_250--Hb_003475_020 Hb_029584_070 Hb_029584_070 Hb_002631_250--Hb_029584_070 Hb_001623_280 Hb_001623_280 Hb_002631_250--Hb_001623_280 Hb_000676_200--Hb_003475_020 Hb_000676_200--Hb_002374_250 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_009778_060 Hb_009778_060 Hb_002374_250--Hb_009778_060 Hb_005511_150 Hb_005511_150 Hb_002374_250--Hb_005511_150 Hb_002374_250--Hb_003089_020 Hb_009178_060 Hb_009178_060 Hb_002374_250--Hb_009178_060 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_000529_140 Hb_000529_140 Hb_008511_140--Hb_000529_140 Hb_000495_080 Hb_000495_080 Hb_008511_140--Hb_000495_080 Hb_001080_030 Hb_001080_030 Hb_008511_140--Hb_001080_030 Hb_008511_140--Hb_000676_200 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_010757_030 Hb_010757_030 Hb_000069_490--Hb_010757_030 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140 Hb_006274_050 Hb_006274_050 Hb_003089_020--Hb_006274_050 Hb_012098_070 Hb_012098_070 Hb_003089_020--Hb_012098_070 Hb_003089_020--Hb_003475_020 Hb_000110_270 Hb_000110_270 Hb_003089_020--Hb_000110_270 Hb_003089_020--Hb_000676_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.944806 2.72126 2.16515 1.65103 2.04785 2.32182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11787 1.73222 1.85846 3.79872 10.6781

CAGE analysis