Hb_003878_080

Information

Type -
Description -
Location Contig3878: 80643-82370
Sequence    

Annotation

kegg
ID rcu:RCOM_0105590
description hypothetical protein
nr
ID XP_012075833.1
description PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10551 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105637045

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_080 0.0 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
2 Hb_000069_490 0.0616993955 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010757_030 0.0985013419 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000676_200 0.1079309718 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
5 Hb_024714_080 0.109377363 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
6 Hb_000934_020 0.1110135283 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
7 Hb_002282_070 0.1145250664 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
8 Hb_001427_040 0.1160381306 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
9 Hb_003475_020 0.1161805522 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
10 Hb_028707_110 0.1171599248 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
11 Hb_002660_190 0.1171648359 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
12 Hb_000189_250 0.120649767 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
13 Hb_003077_130 0.124357438 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
14 Hb_000661_090 0.125556553 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_007576_150 0.1260115714 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
16 Hb_003777_020 0.1293493617 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
17 Hb_002685_060 0.1316944043 - - 30S ribosomal protein S5, putative [Ricinus communis]
18 Hb_016461_030 0.1336593643 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_030131_030 0.1342432682 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
20 Hb_002631_250 0.1345905199 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]

Gene co-expression network

sample Hb_003878_080 Hb_003878_080 Hb_000069_490 Hb_000069_490 Hb_003878_080--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_003878_080--Hb_010757_030 Hb_000676_200 Hb_000676_200 Hb_003878_080--Hb_000676_200 Hb_024714_080 Hb_024714_080 Hb_003878_080--Hb_024714_080 Hb_000934_020 Hb_000934_020 Hb_003878_080--Hb_000934_020 Hb_002282_070 Hb_002282_070 Hb_003878_080--Hb_002282_070 Hb_000069_490--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_000069_490--Hb_010757_030 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_024714_080--Hb_003077_130 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_024714_080--Hb_028707_110 Hb_024714_080--Hb_000997_140 Hb_000189_250 Hb_000189_250 Hb_000934_020--Hb_000189_250 Hb_007576_150 Hb_007576_150 Hb_000934_020--Hb_007576_150 Hb_000640_260 Hb_000640_260 Hb_000934_020--Hb_000640_260 Hb_001890_010 Hb_001890_010 Hb_000934_020--Hb_001890_010 Hb_166127_030 Hb_166127_030 Hb_000934_020--Hb_166127_030 Hb_000934_020--Hb_000069_490 Hb_001427_040 Hb_001427_040 Hb_002282_070--Hb_001427_040 Hb_016461_030 Hb_016461_030 Hb_002282_070--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73666 4.44741 6.29133 4.26912 4.90271 4.43543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52492 3.19941 4.73804 4.3077 29.4702

CAGE analysis