Hb_002685_060

Information

Type -
Description -
Location Contig2685: 59250-62537
Sequence    

Annotation

kegg
ID rcu:RCOM_1674110
description 30S ribosomal protein S5, putative
nr
ID XP_002509457.1
description 30S ribosomal protein S5, putative [Ricinus communis]
swissprot
ID P93014
description 30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=2 SV=1
trembl
ID B9RBC3
description 30S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_1674110 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27952: 59167-62513
cDNA
(Sanger)
(ID:Location)		 024_E12.ab1: 59531-62499 , 048_H10.ab1: 59509-62513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_060 0.0 - - 30S ribosomal protein S5, putative [Ricinus communis]
2 Hb_003777_020 0.0675093465 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
3 Hb_002282_070 0.0805126532 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
4 Hb_016461_030 0.0826517124 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_007054_070 0.0923876405 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
6 Hb_000661_090 0.0982621747 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_005276_010 0.1013391446 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
8 Hb_000164_140 0.1056434395 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_001427_040 0.1100203399 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
10 Hb_006637_080 0.1100381355 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
11 Hb_000345_370 0.1107894926 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
12 Hb_002660_190 0.1110539872 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
13 Hb_000028_110 0.1113221247 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
14 Hb_003475_020 0.1116422246 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
15 Hb_029920_030 0.112004214 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
16 Hb_005282_020 0.1120589436 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
17 Hb_000608_170 0.1124715931 - - F23N19.4 [Arabidopsis thaliana]
18 Hb_011861_050 0.1153488851 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
19 Hb_009020_040 0.1163817546 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
20 Hb_001220_050 0.1184391765 - - DNA-damage-inducible protein f, putative [Ricinus communis]

Gene co-expression network

sample Hb_002685_060 Hb_002685_060 Hb_003777_020 Hb_003777_020 Hb_002685_060--Hb_003777_020 Hb_002282_070 Hb_002282_070 Hb_002685_060--Hb_002282_070 Hb_016461_030 Hb_016461_030 Hb_002685_060--Hb_016461_030 Hb_007054_070 Hb_007054_070 Hb_002685_060--Hb_007054_070 Hb_000661_090 Hb_000661_090 Hb_002685_060--Hb_000661_090 Hb_005276_010 Hb_005276_010 Hb_002685_060--Hb_005276_010 Hb_003777_020--Hb_002282_070 Hb_003777_020--Hb_016461_030 Hb_003777_020--Hb_000661_090 Hb_000345_370 Hb_000345_370 Hb_003777_020--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_003777_020--Hb_001427_040 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_000345_370 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_016461_030--Hb_000345_370 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_016461_030--Hb_001427_040 Hb_001449_070 Hb_001449_070 Hb_007054_070--Hb_001449_070 Hb_007054_070--Hb_016461_030 Hb_000189_450 Hb_000189_450 Hb_007054_070--Hb_000189_450 Hb_007054_070--Hb_005276_010 Hb_009767_130 Hb_009767_130 Hb_007054_070--Hb_009767_130 Hb_002671_130 Hb_002671_130 Hb_000661_090--Hb_002671_130 Hb_000661_090--Hb_016461_030 Hb_000684_280 Hb_000684_280 Hb_000661_090--Hb_000684_280 Hb_000661_090--Hb_002282_070 Hb_000537_070 Hb_000537_070 Hb_000661_090--Hb_000537_070 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_000941_100 Hb_000941_100 Hb_005276_010--Hb_000941_100 Hb_000164_140 Hb_000164_140 Hb_005276_010--Hb_000164_140 Hb_029920_030 Hb_029920_030 Hb_005276_010--Hb_029920_030 Hb_005276_010--Hb_016461_030 Hb_005276_010--Hb_000816_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.7231 35.6652 117.91 73.1655 56.3938 86.3995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.9377 61.2376 77.8003 45.1277 354.056

CAGE analysis