Hb_000661_090

Information

Type -
Description -
Location Contig661: 66315-77421
Sequence    

Annotation

kegg
ID rcu:RCOM_1020460
description Protein ABC1, mitochondrial precursor, putative
nr
ID XP_012092649.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
swissprot
ID Q55680
description Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1
trembl
ID A0A067JC59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06409 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52954: 66324-77503 , PASA_asmbl_52956: 71550-71740 , PASA_asmbl_52957: 73554-73733 , PASA_asmbl_52958: 67746-67911 , PASA_asmbl_52959: 67508-67635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_090 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
2 Hb_002671_130 0.066182679 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
3 Hb_003777_020 0.0789102405 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
4 Hb_016461_030 0.0880673021 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000684_280 0.0927937354 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
6 Hb_002282_070 0.0959971643 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
7 Hb_000537_070 0.0964121252 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
8 Hb_002685_060 0.0982621747 - - 30S ribosomal protein S5, putative [Ricinus communis]
9 Hb_000816_200 0.1002898104 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
10 Hb_001723_030 0.1010251674 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
11 Hb_006062_030 0.1028740004 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
12 Hb_000345_370 0.1082051975 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
13 Hb_003124_120 0.1091742323 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
14 Hb_036790_120 0.1100820548 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
15 Hb_007054_070 0.1116886564 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
16 Hb_000114_150 0.1133496716 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
17 Hb_003941_030 0.1134922577 - - Protease ecfE, putative [Ricinus communis]
18 Hb_000059_270 0.1158010877 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
19 Hb_001009_260 0.1171335494 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
20 Hb_005276_010 0.1177028989 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]

Gene co-expression network

sample Hb_000661_090 Hb_000661_090 Hb_002671_130 Hb_002671_130 Hb_000661_090--Hb_002671_130 Hb_003777_020 Hb_003777_020 Hb_000661_090--Hb_003777_020 Hb_016461_030 Hb_016461_030 Hb_000661_090--Hb_016461_030 Hb_000684_280 Hb_000684_280 Hb_000661_090--Hb_000684_280 Hb_002282_070 Hb_002282_070 Hb_000661_090--Hb_002282_070 Hb_000537_070 Hb_000537_070 Hb_000661_090--Hb_000537_070 Hb_003124_120 Hb_003124_120 Hb_002671_130--Hb_003124_120 Hb_166127_030 Hb_166127_030 Hb_002671_130--Hb_166127_030 Hb_002671_130--Hb_016461_030 Hb_000640_260 Hb_000640_260 Hb_002671_130--Hb_000640_260 Hb_000816_200 Hb_000816_200 Hb_002671_130--Hb_000816_200 Hb_003777_020--Hb_002282_070 Hb_002685_060 Hb_002685_060 Hb_003777_020--Hb_002685_060 Hb_003777_020--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_003777_020--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_003777_020--Hb_001427_040 Hb_016461_030--Hb_002282_070 Hb_016461_030--Hb_000816_200 Hb_016461_030--Hb_000345_370 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_016461_030--Hb_001427_040 Hb_003941_030 Hb_003941_030 Hb_000684_280--Hb_003941_030 Hb_036790_120 Hb_036790_120 Hb_000684_280--Hb_036790_120 Hb_000684_280--Hb_000537_070 Hb_011053_030 Hb_011053_030 Hb_000684_280--Hb_011053_030 Hb_000189_250 Hb_000189_250 Hb_000684_280--Hb_000189_250 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_000345_370 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_002928_030 Hb_002928_030 Hb_000537_070--Hb_002928_030 Hb_000684_430 Hb_000684_430 Hb_000537_070--Hb_000684_430 Hb_006062_030 Hb_006062_030 Hb_000537_070--Hb_006062_030 Hb_001269_500 Hb_001269_500 Hb_000537_070--Hb_001269_500 Hb_001723_030 Hb_001723_030 Hb_000537_070--Hb_001723_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8493 33.9593 72.3344 52.5091 22.4921 31.1019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.7257 24.4077 30.8552 25.2367 217.11

CAGE analysis