Hb_006062_030

Information

Type -
Description -
Location Contig6062: 106787-115716
Sequence    

Annotation

kegg
ID rcu:RCOM_0477800
description mitochondrial translational initiation factor, putative
nr
ID XP_012089508.1
description PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SHI1
description Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2 SV=2
trembl
ID A0A067JUM2
description Translation initiation factor IF-2 OS=Jatropha curcas GN=JCGZ_00191 PE=3 SV=1
Gene Ontology
ID GO:0009570
description translation initiation factor if- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50782: 107378-107930 , PASA_asmbl_50785: 114795-115891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006062_030 0.0 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
2 Hb_000537_070 0.0976310874 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
3 Hb_000661_090 0.1028740004 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_000053_120 0.1092642747 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
5 Hb_001723_030 0.1102398738 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
6 Hb_005618_150 0.1108907464 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
7 Hb_003777_020 0.1304998159 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
8 Hb_002005_040 0.1330601615 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_002671_130 0.1332387299 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
10 Hb_001220_050 0.1374078325 - - DNA-damage-inducible protein f, putative [Ricinus communis]
11 Hb_001269_500 0.1377592693 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
12 Hb_002217_140 0.1379611185 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
13 Hb_000684_430 0.1390862547 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
14 Hb_002027_410 0.1394977302 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
15 Hb_000803_240 0.1397028464 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
16 Hb_000684_280 0.1397888035 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
17 Hb_014361_110 0.1401185787 - - RNA binding protein, putative [Ricinus communis]
18 Hb_002740_190 0.1410708442 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_002928_030 0.1411431262 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
20 Hb_000336_200 0.1433619175 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_006062_030 Hb_006062_030 Hb_000537_070 Hb_000537_070 Hb_006062_030--Hb_000537_070 Hb_000661_090 Hb_000661_090 Hb_006062_030--Hb_000661_090 Hb_000053_120 Hb_000053_120 Hb_006062_030--Hb_000053_120 Hb_001723_030 Hb_001723_030 Hb_006062_030--Hb_001723_030 Hb_005618_150 Hb_005618_150 Hb_006062_030--Hb_005618_150 Hb_003777_020 Hb_003777_020 Hb_006062_030--Hb_003777_020 Hb_002928_030 Hb_002928_030 Hb_000537_070--Hb_002928_030 Hb_000537_070--Hb_000661_090 Hb_000684_430 Hb_000684_430 Hb_000537_070--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_000537_070--Hb_001269_500 Hb_000537_070--Hb_001723_030 Hb_002671_130 Hb_002671_130 Hb_000661_090--Hb_002671_130 Hb_000661_090--Hb_003777_020 Hb_016461_030 Hb_016461_030 Hb_000661_090--Hb_016461_030 Hb_000684_280 Hb_000684_280 Hb_000661_090--Hb_000684_280 Hb_002282_070 Hb_002282_070 Hb_000661_090--Hb_002282_070 Hb_003427_080 Hb_003427_080 Hb_000053_120--Hb_003427_080 Hb_024714_080 Hb_024714_080 Hb_000053_120--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_000053_120--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_000053_120--Hb_000069_490 Hb_000402_170 Hb_000402_170 Hb_000053_120--Hb_000402_170 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_001723_030--Hb_000684_430 Hb_001907_070 Hb_001907_070 Hb_005618_150--Hb_001907_070 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_005618_150--Hb_001723_030 Hb_004871_010 Hb_004871_010 Hb_005618_150--Hb_004871_010 Hb_003777_020--Hb_002282_070 Hb_002685_060 Hb_002685_060 Hb_003777_020--Hb_002685_060 Hb_003777_020--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_003777_020--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_003777_020--Hb_001427_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90513 7.05282 18.9721 8.90755 4.97467 7.0646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06368 2.09243 4.0883 2.4971 42.6919

CAGE analysis