Hb_004871_010

Information

Type -
Description -
Location Contig4871: 10859-16474
Sequence    

Annotation

kegg
ID rcu:RCOM_1515490
description RNA polymerase sigma factor rpoD1, putative
nr
ID XP_002523972.1
description RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
swissprot
ID O22056
description RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB PE=2 SV=2
trembl
ID B9SDA3
description RNA polymerase sigma factor rpoD1, putative OS=Ricinus communis GN=RCOM_1515490 PE=4 SV=1
Gene Ontology
ID GO:0001053
description rna polymerase sigma factor sigb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45051: 10898-11968 , PASA_asmbl_45052: 13177-16406 , PASA_asmbl_45053: 13256-13577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_010 0.0 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
2 Hb_003376_390 0.0682683414 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
3 Hb_000260_710 0.078972994 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
4 Hb_000976_190 0.0857771453 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
5 Hb_006787_090 0.0871831501 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
6 Hb_002928_030 0.0912200013 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
7 Hb_001959_060 0.0965855821 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
8 Hb_172632_060 0.0984014232 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
9 Hb_000358_040 0.1007074713 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
10 Hb_001789_160 0.1044323347 - - PREDICTED: putative transporter arsB [Jatropha curcas]
11 Hb_000311_120 0.104677169 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
12 Hb_000684_430 0.1068883645 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
13 Hb_003029_020 0.1072507137 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_001907_070 0.1082298068 - - 50S ribosomal protein L1p, putative [Ricinus communis]
15 Hb_031042_060 0.1085139495 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000309_020 0.108547243 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
17 Hb_009288_040 0.1097152429 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
18 Hb_005618_080 0.1098629474 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_001454_150 0.1100746327 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
20 Hb_005618_150 0.1109349509 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004871_010 Hb_004871_010 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_003376_390--Hb_002928_030 Hb_001649_030 Hb_001649_030 Hb_003376_390--Hb_001649_030 Hb_172632_060 Hb_172632_060 Hb_003376_390--Hb_172632_060 Hb_000358_040 Hb_000358_040 Hb_003376_390--Hb_000358_040 Hb_000574_470 Hb_000574_470 Hb_003376_390--Hb_000574_470 Hb_031042_060 Hb_031042_060 Hb_000260_710--Hb_031042_060 Hb_001789_160 Hb_001789_160 Hb_000260_710--Hb_001789_160 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_011310_140 Hb_011310_140 Hb_000976_190--Hb_011310_140 Hb_000976_190--Hb_006787_090 Hb_000194_010 Hb_000194_010 Hb_000976_190--Hb_000194_010 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_002928_030--Hb_001649_030 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_006829_080 Hb_006829_080 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35634 6.71071 24.2611 6.87506 6.1732 6.33163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82165 5.87176 2.91894 4.50417 29.3181

CAGE analysis