Hb_025194_090

Information

Type -
Description -
Location Contig25194: 58831-60174
Sequence    

Annotation

kegg
ID rcu:RCOM_0902640
description coproporphyrinogen III oxidase, putative (EC:1.3.3.3)
nr
ID XP_002518396.1
description coproporphyrinogen III oxidase, putative [Ricinus communis]
swissprot
ID Q93Z96
description Coproporphyrinogen-III oxidase 2, chloroplastic OS=Arabidopsis thaliana GN=CPX2 PE=2 SV=1
trembl
ID B9RXC7
description Coproporphyrinogen III oxidase, putative OS=Ricinus communis GN=RCOM_0902640 PE=4 SV=1
Gene Ontology
ID GO:0004109
description coproporphyrinogen iii oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26343: 59274-60170
cDNA
(Sanger)
(ID:Location)		 021_L08.ab1: 59301-60147 , 026_O04.ab1: 59482-60170 , 038_H08.ab1: 59274-60147 , 045_N18.ab1: 59471-60156

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_090 0.0 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
2 Hb_000579_040 0.075089514 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
3 Hb_003029_020 0.0790790058 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
4 Hb_004502_010 0.0818405285 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
5 Hb_004629_030 0.0859559635 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002928_030 0.0896783896 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
7 Hb_000496_130 0.0923180934 - - PREDICTED: fructokinase-1 [Jatropha curcas]
8 Hb_005116_100 0.0926725013 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
9 Hb_009288_040 0.0931366774 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
10 Hb_001390_100 0.0933322444 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
11 Hb_002075_030 0.0956157149 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
12 Hb_004223_270 0.0980583111 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
13 Hb_032631_070 0.0990557923 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_018043_020 0.101323056 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
15 Hb_000358_040 0.104458132 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
16 Hb_001959_060 0.1048926065 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
17 Hb_001425_010 0.1049575932 - - sugar transporter, putative [Ricinus communis]
18 Hb_001143_100 0.1050024836 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
19 Hb_002044_160 0.1068704772 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
20 Hb_001307_100 0.1082186924 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_025194_090 Hb_025194_090 Hb_000579_040 Hb_000579_040 Hb_025194_090--Hb_000579_040 Hb_003029_020 Hb_003029_020 Hb_025194_090--Hb_003029_020 Hb_004502_010 Hb_004502_010 Hb_025194_090--Hb_004502_010 Hb_004629_030 Hb_004629_030 Hb_025194_090--Hb_004629_030 Hb_002928_030 Hb_002928_030 Hb_025194_090--Hb_002928_030 Hb_000496_130 Hb_000496_130 Hb_025194_090--Hb_000496_130 Hb_032631_070 Hb_032631_070 Hb_000579_040--Hb_032631_070 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_010128_020 Hb_010128_020 Hb_003029_020--Hb_010128_020 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010 Hb_005917_020 Hb_005917_020 Hb_004502_010--Hb_005917_020 Hb_004502_010--Hb_003029_020 Hb_005116_100 Hb_005116_100 Hb_004502_010--Hb_005116_100 Hb_005618_080 Hb_005618_080 Hb_004502_010--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_004502_010--Hb_000402_020 Hb_000482_050 Hb_000482_050 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_002928_030--Hb_000358_040 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_003355_010 Hb_003355_010 Hb_000496_130--Hb_003355_010 Hb_000496_130--Hb_001143_100 Hb_007943_150 Hb_007943_150 Hb_000496_130--Hb_007943_150 Hb_004710_020 Hb_004710_020 Hb_000496_130--Hb_004710_020 Hb_000510_190 Hb_000510_190 Hb_000496_130--Hb_000510_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.73252 22.8612 70.1635 29.8673 12.1842 12.0202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1251 17.5348 8.54765 29.4178 93.6455

CAGE analysis