Hb_005618_080

Information

Type -
Description -
Location Contig5618: 66903-71546
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18740g
description POPTRDRAFT_755736; mRNA for protoporphyrinogen oxidase family protein
nr
ID XP_012083019.1
description PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
swissprot
ID P55826
description Protoporphyrinogen oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 SV=1
trembl
ID A0A067K7V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14121 PE=4 SV=1
Gene Ontology
ID GO:0004729
description protoporphyrinogen oxidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48830: 66954-71367 , PASA_asmbl_48831: 67131-71302 , PASA_asmbl_48832: 66918-68769
cDNA
(Sanger)
(ID:Location)		 025_L17.ab1: 66918-68769

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_080 0.0 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
2 Hb_001959_060 0.0700560785 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
3 Hb_000402_020 0.0751996034 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_005116_100 0.0861692641 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
5 Hb_000056_310 0.0863950421 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
6 Hb_006829_080 0.0894351702 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
7 Hb_172632_060 0.0968376476 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
8 Hb_000684_430 0.0972627632 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
9 Hb_000802_050 0.0975880764 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
10 Hb_148146_010 0.1017742231 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
11 Hb_006252_030 0.1018633344 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
12 Hb_002005_040 0.1036918491 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000574_470 0.104937135 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002217_140 0.1050087456 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
15 Hb_002232_380 0.1075534267 - - malate dehydrogenase, putative [Ricinus communis]
16 Hb_012653_030 0.1081340825 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_004055_160 0.1092619828 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
18 Hb_004871_010 0.1098629474 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
19 Hb_009288_040 0.113216782 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
20 Hb_000322_040 0.1143113159 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005618_080 Hb_005618_080 Hb_001959_060 Hb_001959_060 Hb_005618_080--Hb_001959_060 Hb_000402_020 Hb_000402_020 Hb_005618_080--Hb_000402_020 Hb_005116_100 Hb_005116_100 Hb_005618_080--Hb_005116_100 Hb_000056_310 Hb_000056_310 Hb_005618_080--Hb_000056_310 Hb_006829_080 Hb_006829_080 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_001959_060--Hb_006829_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_001959_060--Hb_000402_020 Hb_000402_020--Hb_005116_100 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_000402_020--Hb_006829_080 Hb_000402_020--Hb_000056_310 Hb_002005_040 Hb_002005_040 Hb_005116_100--Hb_002005_040 Hb_005116_100--Hb_148146_010 Hb_004055_160 Hb_004055_160 Hb_005116_100--Hb_004055_160 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_000574_470 Hb_000574_470 Hb_172632_060--Hb_000574_470 Hb_003376_390 Hb_003376_390 Hb_172632_060--Hb_003376_390 Hb_172632_060--Hb_001959_060 Hb_004871_010 Hb_004871_010 Hb_172632_060--Hb_004871_010 Hb_004117_040 Hb_004117_040 Hb_172632_060--Hb_004117_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17642 6.72093 54.3083 15.1163 7.33192 7.88343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.87113 8.24194 3.23759 10.6122 54.5135

CAGE analysis