Hb_000473_050

Information

Type -
Description -
Location Contig473: 61510-67816
Sequence    

Annotation

kegg
ID rcu:RCOM_1190870
description chromatin regulatory protein sir2, putative
nr
ID XP_002516335.1
description chromatin regulatory protein sir2, putative [Ricinus communis]
swissprot
ID Q94AQ6
description NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1
trembl
ID B9RRG6
description NAD-dependent protein deacetylase OS=Ricinus communis GN=RCOM_1190870 PE=3 SV=1
Gene Ontology
ID GO:0005759
description nad-dependent protein deacetylase srt2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44411: 62480-65342 , PASA_asmbl_44412: 64166-64387 , PASA_asmbl_44413: 66226-67684 , PASA_asmbl_44414: 66966-67683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_050 0.0 - - chromatin regulatory protein sir2, putative [Ricinus communis]
2 Hb_006829_080 0.0741040074 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_189003_060 0.0851732977 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_158092_100 0.0924934744 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
5 Hb_009687_020 0.0927940639 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
6 Hb_001959_060 0.0976647263 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
7 Hb_000684_430 0.1027193021 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
8 Hb_004055_160 0.1031464959 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
9 Hb_169209_010 0.1041459712 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
10 Hb_003549_140 0.1082382867 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_003948_020 0.1090492832 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
12 Hb_000922_340 0.1095594919 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
13 Hb_000042_290 0.1128832798 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
14 Hb_002498_160 0.1135810184 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
15 Hb_001269_500 0.1165834556 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
16 Hb_005618_080 0.1181235845 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
17 Hb_002759_120 0.1193637591 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002217_140 0.1205974305 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
19 Hb_002411_100 0.121450835 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_002005_040 0.1216962921 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000473_050 Hb_000473_050 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430 Hb_006829_080--Hb_001959_060 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_005147_080 Hb_005147_080 Hb_189003_060--Hb_005147_080 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_189003_060--Hb_001959_060 Hb_189003_060--Hb_000684_430 Hb_000480_040 Hb_000480_040 Hb_189003_060--Hb_000480_040 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_158092_100--Hb_004055_160 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_009687_020--Hb_004055_160 Hb_001269_500 Hb_001269_500 Hb_009687_020--Hb_001269_500 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34943 0.914487 10.9027 5.61514 1.40565 1.49149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14649 2.21946 2.17692 2.21432 14.1409

CAGE analysis