Hb_007904_060

Information

Type -
Description -
Location Contig7904: 40935-47936
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06220g
description POPTRDRAFT_821856; b-keto acyl reductase family protein
nr
ID XP_012085563.1
description PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
swissprot
ID Q8L9C4
description Very-long-chain 3-oxoacyl-CoA reductase 1 OS=Arabidopsis thaliana GN=KCR1 PE=1 SV=1
trembl
ID A0A067JVB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17881 PE=3 SV=1
Gene Ontology
ID GO:0004303
description very-long-chain 3-oxoacyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58310: 41133-42576 , PASA_asmbl_58311: 44840-47839 , PASA_asmbl_58312: 47134-47389 , PASA_asmbl_58314: 46952-47086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_060 0.0 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
2 Hb_005784_030 0.0811072227 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
3 Hb_158092_100 0.0874661368 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
4 Hb_000108_150 0.0906879337 - - alpha/beta hydrolase, putative [Ricinus communis]
5 Hb_006420_010 0.0908413739 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
6 Hb_003020_250 0.0926266095 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
7 Hb_003752_090 0.094438543 - - chitinase, putative [Ricinus communis]
8 Hb_000264_280 0.1033955243 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_002759_120 0.1034212973 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002374_450 0.1063954031 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_000061_250 0.1073085441 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
12 Hb_000996_080 0.1082402558 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
13 Hb_000749_020 0.1128884256 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
14 Hb_002044_160 0.1136315527 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
15 Hb_012180_060 0.1137762787 - - peptidase, putative [Ricinus communis]
16 Hb_001365_030 0.1140097719 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
17 Hb_002817_040 0.119348919 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
18 Hb_006130_020 0.1233172536 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_003664_030 0.1246283454 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
20 Hb_003948_020 0.1253963021 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]

Gene co-expression network

sample Hb_007904_060 Hb_007904_060 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_158092_100 Hb_158092_100 Hb_007904_060--Hb_158092_100 Hb_000108_150 Hb_000108_150 Hb_007904_060--Hb_000108_150 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090 Hb_003664_030 Hb_003664_030 Hb_005784_030--Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_005784_030--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_005784_030--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_005784_030--Hb_000270_280 Hb_003948_020 Hb_003948_020 Hb_005784_030--Hb_003948_020 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_158092_100--Hb_006420_010 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000108_150--Hb_000264_280 Hb_006420_010--Hb_000264_280 Hb_006420_010--Hb_000108_150 Hb_006420_010--Hb_000061_250 Hb_004162_270 Hb_004162_270 Hb_006420_010--Hb_004162_270 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003020_250--Hb_003752_090 Hb_000996_080 Hb_000996_080 Hb_003020_250--Hb_000996_080 Hb_000327_200 Hb_000327_200 Hb_003020_250--Hb_000327_200 Hb_000940_030 Hb_000940_030 Hb_003020_250--Hb_000940_030 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75905 6.26179 38.978 25.4431 4.10625 3.72893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85142 7.53455 2.82738 9.15613 42.5525

CAGE analysis