Hb_003020_250

Information

Type -
Description -
Location Contig3020: 153383-159178
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25260g
description POPTRDRAFT_641133; Serine/threonine protein phosphatase PP1 isozyme 1
nr
ID XP_012066949.1
description PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
swissprot
ID O04857
description Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1
trembl
ID A0A067L196
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_02927 PE=3 SV=1
Gene Ontology
ID GO:0000164
description serine threonine-protein phosphatase pp1 isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_250 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
2 Hb_004440_070 0.079013662 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
3 Hb_003752_090 0.0794250934 - - chitinase, putative [Ricinus communis]
4 Hb_000996_080 0.0834164382 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
5 Hb_007904_060 0.0926266095 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
6 Hb_000327_200 0.0988759089 - - glutathione-s-transferase omega, putative [Ricinus communis]
7 Hb_000940_030 0.1025732687 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
8 Hb_000076_250 0.1072862063 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000594_060 0.1094602495 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
10 Hb_000069_360 0.1111352508 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004223_270 0.1122769877 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
12 Hb_000402_020 0.1132100893 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003664_030 0.1136241807 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
14 Hb_005665_090 0.1136391527 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
15 Hb_001587_040 0.1141920701 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
16 Hb_003175_070 0.1154409673 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
17 Hb_034579_020 0.1157068641 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000566_010 0.1164589967 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_009288_040 0.1175575335 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
20 Hb_000212_250 0.1214346095 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003020_250 Hb_003020_250 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003752_090 Hb_003752_090 Hb_003020_250--Hb_003752_090 Hb_000996_080 Hb_000996_080 Hb_003020_250--Hb_000996_080 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_000327_200 Hb_000327_200 Hb_003020_250--Hb_000327_200 Hb_000940_030 Hb_000940_030 Hb_003020_250--Hb_000940_030 Hb_001663_130 Hb_001663_130 Hb_004440_070--Hb_001663_130 Hb_003175_070 Hb_003175_070 Hb_004440_070--Hb_003175_070 Hb_004440_070--Hb_000327_200 Hb_001021_210 Hb_001021_210 Hb_004440_070--Hb_001021_210 Hb_005665_090 Hb_005665_090 Hb_004440_070--Hb_005665_090 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_000996_080--Hb_000940_030 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_158092_100 Hb_158092_100 Hb_007904_060--Hb_158092_100 Hb_000108_150 Hb_000108_150 Hb_007904_060--Hb_000108_150 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_007904_060--Hb_003752_090 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000327_200--Hb_000310_060 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52236 5.38728 21.0945 11.7609 1.95077 1.72545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94554 3.94317 0.875682 4.37271 17.0609

CAGE analysis