Hb_000327_200

Information

Type -
Description -
Location Contig327: 204795-207638
Sequence    

Annotation

kegg
ID rcu:RCOM_0744640
description glutathione-s-transferase omega, putative
nr
ID XP_002525064.1
description glutathione-s-transferase omega, putative [Ricinus communis]
swissprot
ID Q8H8U5
description Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1
trembl
ID B9SGE5
description Glutathione-s-transferase omega, putative OS=Ricinus communis GN=RCOM_0744640 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein in2-1 homolog b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34380: 203805-207638 , PASA_asmbl_34381: 204691-207481 , PASA_asmbl_34382: 206381-206661
cDNA
(Sanger)
(ID:Location)		 031_P22.ab1: 205766-207623 , 035_D24.ab1: 205766-207627 , 046_E09.ab1: 206005-207630

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_200 0.0 - - glutathione-s-transferase omega, putative [Ricinus communis]
2 Hb_000069_360 0.0870461328 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000310_060 0.0909933952 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
4 Hb_000996_080 0.0964100085 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
5 Hb_003020_250 0.0988759089 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
6 Hb_001587_040 0.1029559619 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
7 Hb_000334_050 0.105709929 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_000270_280 0.1095748376 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_003752_090 0.1118993375 - - chitinase, putative [Ricinus communis]
10 Hb_004440_070 0.1123314397 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
11 Hb_000011_560 0.1132166118 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
12 Hb_005784_030 0.114479249 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
13 Hb_000566_010 0.1145099593 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_000940_030 0.11457581 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
15 Hb_003664_030 0.1153602864 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
16 Hb_003994_080 0.1199949401 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
17 Hb_003050_360 0.1204453545 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
18 Hb_003398_040 0.1206209412 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
19 Hb_004223_270 0.1222905518 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
20 Hb_003175_070 0.1223900077 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_000327_200 Hb_000327_200 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000310_060 Hb_000310_060 Hb_000327_200--Hb_000310_060 Hb_000996_080 Hb_000996_080 Hb_000327_200--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000327_200--Hb_003020_250 Hb_001587_040 Hb_001587_040 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_003994_080 Hb_003994_080 Hb_000069_360--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000069_360--Hb_000140_060 Hb_003752_090 Hb_003752_090 Hb_000069_360--Hb_003752_090 Hb_000069_360--Hb_003020_250 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_003398_040 Hb_003398_040 Hb_000310_060--Hb_003398_040 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_000996_080--Hb_003020_250 Hb_000996_080--Hb_000940_030 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_000996_080--Hb_001587_040 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003020_250--Hb_003752_090 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_003020_250--Hb_000940_030 Hb_001587_040--Hb_003398_040 Hb_001587_040--Hb_005527_060 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_004223_270 Hb_004223_270 Hb_000334_050--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000334_050--Hb_022425_050 Hb_000933_110 Hb_000933_110 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04533 8.0076 24.6227 14.8308 1.7792 1.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.27875 3.81544 2.35511 4.79137 18.1147

CAGE analysis