Hb_000996_080

Information

Type -
Description -
Location Contig996: 100779-106748
Sequence    

Annotation

kegg
ID rcu:RCOM_1686300
description ATP binding protein, putative
nr
ID XP_012086945.1
description PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64833: 100810-104574 , PASA_asmbl_64834: 104596-106703 , PASA_asmbl_64835: 105654-106703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_080 0.0 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
2 Hb_003020_250 0.0834164382 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
3 Hb_000940_030 0.0944439972 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
4 Hb_000327_200 0.0964100085 - - glutathione-s-transferase omega, putative [Ricinus communis]
5 Hb_000310_060 0.0970946891 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
6 Hb_000689_050 0.099833544 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001587_040 0.0999706693 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
8 Hb_002701_070 0.1031306777 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
9 Hb_003640_050 0.103471312 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_003752_090 0.1044420025 - - chitinase, putative [Ricinus communis]
11 Hb_000076_250 0.1050222759 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000566_010 0.1066023639 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
13 Hb_007904_060 0.1082402558 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
14 Hb_003175_070 0.1145555291 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
15 Hb_000270_280 0.1154428155 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
16 Hb_010632_020 0.1163488148 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
17 Hb_005665_090 0.1171105198 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
18 Hb_034579_020 0.1171768708 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002044_160 0.1173786004 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
20 Hb_010868_040 0.1180077635 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000996_080 Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000996_080--Hb_003020_250 Hb_000940_030 Hb_000940_030 Hb_000996_080--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000996_080--Hb_000327_200 Hb_000310_060 Hb_000310_060 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_001587_040 Hb_001587_040 Hb_000996_080--Hb_001587_040 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003752_090 Hb_003752_090 Hb_003020_250--Hb_003752_090 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_003020_250--Hb_000327_200 Hb_003020_250--Hb_000940_030 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000327_200--Hb_000310_060 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_000310_060--Hb_000270_280 Hb_003398_040 Hb_003398_040 Hb_000310_060--Hb_003398_040 Hb_000310_060--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_001587_040--Hb_003398_040 Hb_001587_040--Hb_005527_060 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13968 1.90236 10.5509 6.00423 0.681711 0.594183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41826 1.06421 0.780869 2.35099 7.87844

CAGE analysis