Hb_003752_090

Information

Type -
Description -
Location Contig3752: 98756-103016
Sequence    

Annotation

kegg
ID rcu:RCOM_1628360
description chitinase, putative
nr
ID XP_002527287.1
description chitinase, putative [Ricinus communis]
swissprot
ID Q56XR7
description Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana GN=STR4A PE=2 SV=1
trembl
ID B9SMR8
description Chitinase, putative OS=Ricinus communis GN=RCOM_1628360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38324: 100557-102868 , PASA_asmbl_38325: 98881-102868 , PASA_asmbl_38327: 104014-108403
cDNA
(Sanger)
(ID:Location)		 043_F07.ab1: 100924-102868

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_090 0.0 - - chitinase, putative [Ricinus communis]
2 Hb_009288_040 0.0594450584 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
3 Hb_003994_080 0.0709596529 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
4 Hb_003020_250 0.0794250934 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
5 Hb_005665_090 0.0858644262 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
6 Hb_002759_120 0.0882570361 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001649_030 0.0897321242 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
8 Hb_000465_440 0.0925118499 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
9 Hb_007904_060 0.094438543 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
10 Hb_000402_020 0.0948105879 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001021_210 0.0963148508 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_010620_050 0.097271344 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
13 Hb_000094_100 0.0979182815 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
14 Hb_002374_450 0.1002500399 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_001269_500 0.100794441 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
16 Hb_000566_010 0.1011378521 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_001390_100 0.1043551927 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
18 Hb_000996_080 0.1044420025 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
19 Hb_003664_030 0.1047443268 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
20 Hb_158092_100 0.1054937861 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]

Gene co-expression network

sample Hb_003752_090 Hb_003752_090 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_003994_080--Hb_010620_050 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_000996_080 Hb_000996_080 Hb_003020_250--Hb_000996_080 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_000327_200 Hb_000327_200 Hb_003020_250--Hb_000327_200 Hb_000940_030 Hb_000940_030 Hb_003020_250--Hb_000940_030 Hb_005665_090--Hb_012779_080 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050 Hb_000096_190 Hb_000096_190 Hb_002759_120--Hb_000096_190 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_042083_040 Hb_042083_040 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_002759_120--Hb_003994_080 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.71591 8.42666 32.3347 18.9414 3.78364 5.40471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61679 6.58792 3.38628 6.60062 31.5249

CAGE analysis