Hb_001021_210

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1021: 239795-241012
Sequence    

Annotation

kegg
ID rcu:RCOM_0555360
description hypothetical protein
nr
ID XP_002520664.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3U5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555360 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_210 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_003994_080 0.0798487658 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
3 Hb_010620_050 0.0862529907 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
4 Hb_003752_090 0.0963148508 - - chitinase, putative [Ricinus communis]
5 Hb_005000_080 0.1029059956 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
6 Hb_002107_050 0.1052157361 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
7 Hb_007594_080 0.1054234121 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
8 Hb_000094_100 0.1095067526 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
9 Hb_012779_080 0.1111585489 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
10 Hb_000016_310 0.1112570984 - - protein binding protein, putative [Ricinus communis]
11 Hb_000069_360 0.1134343761 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004440_070 0.1144911827 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
13 Hb_000099_170 0.1147038842 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
14 Hb_005665_090 0.115776921 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
15 Hb_002675_080 0.1171342821 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
16 Hb_003175_070 0.1172645916 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
17 Hb_003687_080 0.1190559626 - - PREDICTED: casein kinase I-like [Jatropha curcas]
18 Hb_009288_040 0.1191999592 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
19 Hb_004837_210 0.1209277559 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
20 Hb_003883_010 0.1214774199 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_001021_210 Hb_001021_210 Hb_003994_080 Hb_003994_080 Hb_001021_210--Hb_003994_080 Hb_010620_050 Hb_010620_050 Hb_001021_210--Hb_010620_050 Hb_003752_090 Hb_003752_090 Hb_001021_210--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_001021_210--Hb_005000_080 Hb_002107_050 Hb_002107_050 Hb_001021_210--Hb_002107_050 Hb_007594_080 Hb_007594_080 Hb_001021_210--Hb_007594_080 Hb_003994_080--Hb_003752_090 Hb_003994_080--Hb_005000_080 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_003994_080--Hb_010620_050 Hb_010620_050--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_010620_050--Hb_012779_080 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_010620_050--Hb_138585_030 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_005000_080--Hb_138585_030 Hb_000188_060 Hb_000188_060 Hb_005000_080--Hb_000188_060 Hb_000235_070 Hb_000235_070 Hb_005000_080--Hb_000235_070 Hb_003883_010 Hb_003883_010 Hb_002107_050--Hb_003883_010 Hb_002107_050--Hb_003071_030 Hb_002107_050--Hb_160271_010 Hb_005235_070 Hb_005235_070 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19132 5.26505 12.9706 8.48143 1.92707 1.99146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23551 2.10052 2.10116 1.56943 11.6236

CAGE analysis