Hb_001649_030

Information

Type -
Description -
Location Contig1649: 7257-11571
Sequence    

Annotation

kegg
ID rcu:RCOM_1063400
description polypeptide deformylase, putative (EC:3.5.1.88)
nr
ID XP_012072444.1
description PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
swissprot
ID Q9FUZ2
description Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PDF1B PE=1 SV=2
trembl
ID A0A067LGF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10273 PE=3 SV=1
Gene Ontology
ID GO:0005506
description polypeptide isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15156: 7243-11644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001649_030 0.0 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
2 Hb_001269_500 0.0657737463 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
3 Hb_002928_030 0.0683439991 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
4 Hb_000665_270 0.0780677465 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
5 Hb_003752_090 0.0897321242 - - chitinase, putative [Ricinus communis]
6 Hb_000358_040 0.089912513 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
7 Hb_003376_390 0.0904981957 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
8 Hb_005116_100 0.0910270173 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
9 Hb_000336_200 0.0930828129 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_000264_280 0.0933973741 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
11 Hb_004223_270 0.0945009279 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
12 Hb_009288_040 0.0952959733 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
13 Hb_027445_100 0.0962488734 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
14 Hb_002005_040 0.097276904 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_006829_080 0.103526256 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
16 Hb_000402_020 0.1049759171 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001959_060 0.1065386334 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
18 Hb_003664_030 0.1082597957 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
19 Hb_000537_070 0.1082836142 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
20 Hb_025194_090 0.109078692 - - coproporphyrinogen III oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001649_030 Hb_001649_030 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_000465_440 Hb_000465_440 Hb_000665_270--Hb_000465_440 Hb_000665_270--Hb_000336_200 Hb_000665_270--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000665_270--Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_000358_040--Hb_004629_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_000358_040--Hb_003376_390 Hb_003376_390--Hb_004871_010 Hb_172632_060 Hb_172632_060 Hb_003376_390--Hb_172632_060 Hb_000574_470 Hb_000574_470 Hb_003376_390--Hb_000574_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68984 7.03277 18.6703 9.73464 2.66418 3.82537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33217 4.52675 1.75447 2.96994 27.0566

CAGE analysis