Hb_172632_060

Information

Type -
Description -
Location Contig172632: 27179-34001
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00440g
description POPTRDRAFT_563429; hypothetical protein
nr
ID XP_012087305.1
description PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22575 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16344: 27397-28310 , PASA_asmbl_16346: 28411-33847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_060 0.0 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
2 Hb_000574_470 0.0461448435 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_003376_390 0.093397683 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
4 Hb_001959_060 0.0961687674 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
5 Hb_005618_080 0.0968376476 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
6 Hb_004871_010 0.0984014232 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
7 Hb_004117_040 0.1084604162 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
8 Hb_000402_020 0.1152706613 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000212_250 0.1177831117 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011476_030 0.1178865442 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
11 Hb_000146_030 0.1229723716 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
12 Hb_007217_010 0.1252775282 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_140360_010 0.125816596 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
14 Hb_002986_090 0.1265123341 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000056_310 0.1273839985 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
16 Hb_006787_090 0.128600393 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
17 Hb_001519_170 0.1288955862 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
18 Hb_001638_310 0.1295430036 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
19 Hb_006252_030 0.1298877114 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
20 Hb_148146_010 0.1317463525 - - coproporphyrinogen III oxidase [Ziziphus jujuba]

Gene co-expression network

sample Hb_172632_060 Hb_172632_060 Hb_000574_470 Hb_000574_470 Hb_172632_060--Hb_000574_470 Hb_003376_390 Hb_003376_390 Hb_172632_060--Hb_003376_390 Hb_001959_060 Hb_001959_060 Hb_172632_060--Hb_001959_060 Hb_005618_080 Hb_005618_080 Hb_172632_060--Hb_005618_080 Hb_004871_010 Hb_004871_010 Hb_172632_060--Hb_004871_010 Hb_004117_040 Hb_004117_040 Hb_172632_060--Hb_004117_040 Hb_011476_030 Hb_011476_030 Hb_000574_470--Hb_011476_030 Hb_000574_470--Hb_003376_390 Hb_000574_470--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_000574_470--Hb_000212_250 Hb_000574_470--Hb_001959_060 Hb_003376_390--Hb_004871_010 Hb_002928_030 Hb_002928_030 Hb_003376_390--Hb_002928_030 Hb_001649_030 Hb_001649_030 Hb_003376_390--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_003376_390--Hb_000358_040 Hb_006829_080 Hb_006829_080 Hb_001959_060--Hb_006829_080 Hb_001959_060--Hb_005618_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_005618_080--Hb_000402_020 Hb_005116_100 Hb_005116_100 Hb_005618_080--Hb_005116_100 Hb_000056_310 Hb_000056_310 Hb_005618_080--Hb_000056_310 Hb_005618_080--Hb_006829_080 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_004871_010--Hb_002928_030 Hb_004871_010--Hb_001959_060 Hb_004117_040--Hb_006829_080 Hb_004117_040--Hb_001959_060 Hb_005333_200 Hb_005333_200 Hb_004117_040--Hb_005333_200 Hb_002150_130 Hb_002150_130 Hb_004117_040--Hb_002150_130 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82946 2.73674 14.6391 2.81045 2.49912 1.84496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00906 3.51237 0.753645 1.77297 12.115

CAGE analysis