Hb_004117_040

Information

Type -
Description -
Location Contig4117: 17567-20979
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10230g
description hypothetical protein
nr
ID XP_012077470.1
description PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9MWH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10230g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40742: 18329-20920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_040 0.0 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
2 Hb_006829_080 0.1053677036 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_172632_060 0.1084604162 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
4 Hb_001959_060 0.1103791098 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
5 Hb_005333_200 0.116322248 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
6 Hb_002150_130 0.1169367168 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_002986_090 0.1172633631 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_000146_030 0.1179633204 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
9 Hb_000574_470 0.1192281672 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_002232_380 0.1201154527 - - malate dehydrogenase, putative [Ricinus communis]
11 Hb_000402_020 0.1216043949 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_005618_080 0.1217391517 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_003376_390 0.1224370618 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
14 Hb_003549_140 0.1224647789 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_003209_010 0.1240487144 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
16 Hb_000005_130 0.1247890182 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
17 Hb_011114_020 0.1253957184 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
18 Hb_001269_500 0.1255476881 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
19 Hb_001649_030 0.1261148469 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
20 Hb_007426_170 0.1264429258 transcription factor TF Family: TCP -

Gene co-expression network

sample Hb_004117_040 Hb_004117_040 Hb_006829_080 Hb_006829_080 Hb_004117_040--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_004117_040--Hb_172632_060 Hb_001959_060 Hb_001959_060 Hb_004117_040--Hb_001959_060 Hb_005333_200 Hb_005333_200 Hb_004117_040--Hb_005333_200 Hb_002150_130 Hb_002150_130 Hb_004117_040--Hb_002150_130 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_000684_430 Hb_000684_430 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_000574_470 Hb_000574_470 Hb_172632_060--Hb_000574_470 Hb_003376_390 Hb_003376_390 Hb_172632_060--Hb_003376_390 Hb_172632_060--Hb_001959_060 Hb_005618_080 Hb_005618_080 Hb_172632_060--Hb_005618_080 Hb_004871_010 Hb_004871_010 Hb_172632_060--Hb_004871_010 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_003752_090 Hb_003752_090 Hb_005333_200--Hb_003752_090 Hb_003209_010 Hb_003209_010 Hb_005333_200--Hb_003209_010 Hb_000152_490 Hb_000152_490 Hb_005333_200--Hb_000152_490 Hb_000465_440 Hb_000465_440 Hb_005333_200--Hb_000465_440 Hb_001793_020 Hb_001793_020 Hb_005333_200--Hb_001793_020 Hb_000042_290 Hb_000042_290 Hb_002150_130--Hb_000042_290 Hb_005914_050 Hb_005914_050 Hb_002150_130--Hb_005914_050 Hb_000176_010 Hb_000176_010 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_007217_010 Hb_007217_010 Hb_002986_090--Hb_007217_010 Hb_163950_070 Hb_163950_070 Hb_002986_090--Hb_163950_070 Hb_009288_040 Hb_009288_040 Hb_002986_090--Hb_009288_040 Hb_000094_100 Hb_000094_100 Hb_002986_090--Hb_000094_100 Hb_006907_060 Hb_006907_060 Hb_002986_090--Hb_006907_060 Hb_002986_090--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54965 5.51964 36.0477 13.0306 5.99498 5.62356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.71709 10.4711 2.92487 2.34412 37.1696

CAGE analysis