Hb_005914_050

Information

Type -
Description -
Location Contig5914: 28223-29427
Sequence    

Annotation

kegg
ID rcu:RCOM_1168240
description 50S ribosomal protein L28, chloroplast precursor, putative
nr
ID XP_012069884.1
description PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
swissprot
ID O22795
description 50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2
trembl
ID A0A067KZG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02366 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50224: 28148-29435 , PASA_asmbl_50225: 28863-29051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_050 0.0 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
2 Hb_002150_130 0.0997677045 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
3 Hb_003209_010 0.1045643174 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
4 Hb_012545_040 0.1084417023 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001124_190 0.1108391578 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000176_010 0.1146087037 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
7 Hb_000676_020 0.1211316122 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
8 Hb_003038_100 0.1244890045 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
9 Hb_000922_340 0.125229523 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
10 Hb_009178_070 0.1277448458 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
11 Hb_002986_090 0.1328696891 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_000042_290 0.1359484433 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
13 Hb_002759_120 0.1418894375 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002498_160 0.1421410316 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
15 Hb_000000_180 0.142223836 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
16 Hb_004117_040 0.1433164076 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
17 Hb_001329_090 0.1438837657 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021650_040 0.1507031697 - - EG2771 [Manihot esculenta]
19 Hb_001322_230 0.1517314318 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
20 Hb_009780_050 0.1528636708 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005914_050 Hb_005914_050 Hb_002150_130 Hb_002150_130 Hb_005914_050--Hb_002150_130 Hb_003209_010 Hb_003209_010 Hb_005914_050--Hb_003209_010 Hb_012545_040 Hb_012545_040 Hb_005914_050--Hb_012545_040 Hb_001124_190 Hb_001124_190 Hb_005914_050--Hb_001124_190 Hb_000176_010 Hb_000176_010 Hb_005914_050--Hb_000176_010 Hb_000676_020 Hb_000676_020 Hb_005914_050--Hb_000676_020 Hb_000042_290 Hb_000042_290 Hb_002150_130--Hb_000042_290 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_000922_340 Hb_000922_340 Hb_003209_010--Hb_000922_340 Hb_005333_200 Hb_005333_200 Hb_003209_010--Hb_005333_200 Hb_003209_010--Hb_009178_070 Hb_003209_010--Hb_004117_040 Hb_003209_010--Hb_002150_130 Hb_000000_180 Hb_000000_180 Hb_012545_040--Hb_000000_180 Hb_004459_060 Hb_004459_060 Hb_012545_040--Hb_004459_060 Hb_006620_070 Hb_006620_070 Hb_012545_040--Hb_006620_070 Hb_002411_100 Hb_002411_100 Hb_012545_040--Hb_002411_100 Hb_000146_030 Hb_000146_030 Hb_012545_040--Hb_000146_030 Hb_001124_180 Hb_001124_180 Hb_001124_190--Hb_001124_180 Hb_169209_010 Hb_169209_010 Hb_001124_190--Hb_169209_010 Hb_001124_190--Hb_000042_290 Hb_001124_190--Hb_000676_020 Hb_001124_190--Hb_000176_010 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_000176_010--Hb_001124_180 Hb_000176_010--Hb_000627_300 Hb_000176_010--Hb_000042_290 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_068194_010 Hb_068194_010 Hb_000676_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_002498_160 Hb_002498_160 Hb_000676_020--Hb_002498_160 Hb_009851_010 Hb_009851_010 Hb_000676_020--Hb_009851_010 Hb_000820_140 Hb_000820_140 Hb_000676_020--Hb_000820_140 Hb_002205_140 Hb_002205_140 Hb_000676_020--Hb_002205_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4592 10.2325 179.623 94.8627 14.9152 23.1379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.0389 75.2706 28.739 13.1536 133.393

CAGE analysis