Hb_000146_030

Information

Type -
Description -
Location Contig146: 78453-79136
Sequence    

Annotation

kegg
ID rcu:RCOM_0811410
description 50S ribosomal protein L10, putative
nr
ID XP_012075838.1
description PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
swissprot
ID Q9FY50
description 50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1
trembl
ID A0A067LF88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1
Gene Ontology
ID GO:0005622
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11858: 78398-79404
cDNA
(Sanger)
(ID:Location)		 052_D17.ab1: 78437-79141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_030 0.0 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
2 Hb_001047_180 0.0877505686 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004459_060 0.0933612136 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
4 Hb_002411_100 0.1048697709 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_000402_020 0.1052904624 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_004007_170 0.1057276991 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_000322_040 0.1072835185 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
8 Hb_000005_130 0.1094891569 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
9 Hb_011114_020 0.109899216 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
10 Hb_001519_170 0.1099367685 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
11 Hb_006252_030 0.1116787488 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
12 Hb_000000_180 0.1118234924 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
13 Hb_000703_070 0.111855761 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
14 Hb_005000_060 0.114922631 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
15 Hb_004117_040 0.1179633204 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
16 Hb_003470_100 0.1182819509 - - protein binding protein, putative [Ricinus communis]
17 Hb_001711_060 0.1190232843 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
18 Hb_001366_350 0.1197082748 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
19 Hb_172632_060 0.1229723716 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
20 Hb_000802_050 0.1236775364 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000146_030 Hb_000146_030 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_001047_180--Hb_002411_100 Hb_010557_010 Hb_010557_010 Hb_001047_180--Hb_010557_010 Hb_006583_030 Hb_006583_030 Hb_001047_180--Hb_006583_030 Hb_000703_070 Hb_000703_070 Hb_001047_180--Hb_000703_070 Hb_001047_180--Hb_004007_170 Hb_006620_070 Hb_006620_070 Hb_004459_060--Hb_006620_070 Hb_007694_060 Hb_007694_060 Hb_004459_060--Hb_007694_060 Hb_004459_060--Hb_002411_100 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_000005_130 Hb_000005_130 Hb_004459_060--Hb_000005_130 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_010557_010 Hb_002411_100--Hb_000703_070 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_005618_080 Hb_005618_080 Hb_000402_020--Hb_005618_080 Hb_005116_100 Hb_005116_100 Hb_000402_020--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_000402_020--Hb_001959_060 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_006829_080 Hb_006829_080 Hb_000402_020--Hb_006829_080 Hb_000056_310 Hb_000056_310 Hb_000402_020--Hb_000056_310 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004007_170--Hb_004855_070 Hb_006252_030 Hb_006252_030 Hb_000322_040--Hb_006252_030 Hb_000934_260 Hb_000934_260 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.306 17.4439 175.057 45.2232 12.1922 14.1076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7099 30.9399 5.84496 8.5884 143.273

CAGE analysis