Hb_004208_090

Information

Type -
Description -
Location Contig4208: 79960-92119
Sequence    

Annotation

kegg
ID rcu:RCOM_1355260
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_002519509.1
description RNA polymerase sigma factor rpoD, putative [Ricinus communis]
swissprot
ID Q9LD95
description RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF PE=1 SV=1
trembl
ID B9S0J0
description RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1355260 PE=4 SV=1
Gene Ontology
ID GO:0001053
description rna polymerase sigma factor chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41565: 87661-92068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_090 0.0 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
2 Hb_001999_260 0.0565119339 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
3 Hb_000934_260 0.077198878 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_004117_150 0.0791061956 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
5 Hb_006681_020 0.0880121943 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
6 Hb_004855_070 0.0898703864 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
7 Hb_000768_120 0.0909381156 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
8 Hb_000322_040 0.1016412361 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
9 Hb_002400_010 0.1046186283 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
10 Hb_000637_070 0.1099128877 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
11 Hb_005488_190 0.1104712307 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_000062_480 0.114641497 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
13 Hb_003470_100 0.1151167932 - - protein binding protein, putative [Ricinus communis]
14 Hb_006583_030 0.1169788569 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
15 Hb_005000_060 0.1182931429 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
16 Hb_006252_030 0.1186519506 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
17 Hb_000056_310 0.1200461958 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
18 Hb_000703_070 0.120339463 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
19 Hb_126933_020 0.1212732081 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
20 Hb_001047_180 0.1250715697 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004208_090 Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004117_150 Hb_004117_150 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_001999_260--Hb_006681_020 Hb_006583_030 Hb_006583_030 Hb_001999_260--Hb_006583_030 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_001999_260--Hb_000934_260 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000322_040 Hb_000322_040 Hb_000934_260--Hb_000322_040 Hb_050514_020 Hb_050514_020 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160 Hb_004117_150--Hb_006681_020 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_004855_070 Hb_006681_020--Hb_006583_030 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_004855_070--Hb_000768_120 Hb_004855_070--Hb_006583_030 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_000768_120--Hb_001999_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08412 3.36495 27.0148 5.96866 2.35614 2.79274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.711568 0.869341 0.785611 1.36972 22.1469

CAGE analysis