Hb_004855_070

Information

Type -
Description -
Location Contig4855: 89669-90574
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12110g
description POPTRDRAFT_825331; PLASTID-SPECIFIC RIBOSOMAL protein 4
nr
ID XP_002322970.1
description PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
swissprot
ID O80439
description 30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1
trembl
ID B9IG72
description PLASTID-SPECIFIC RIBOSOMAL protein 4 OS=Populus trichocarpa GN=POPTR_0016s12110g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44976: 89713-90516 , PASA_asmbl_44977: 89903-90175
cDNA
(Sanger)
(ID:Location)		 015_N01.ab1: 89713-90478 , 036_N12.ab1: 89732-90516 , 041_E13.ab1: 89771-90454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004855_070 0.0 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
2 Hb_006681_020 0.0759305855 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
3 Hb_000768_120 0.081268506 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
4 Hb_004208_090 0.0898703864 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_006583_030 0.0957467068 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
6 Hb_001999_260 0.0963720984 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
7 Hb_000134_040 0.0967096481 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
8 Hb_005488_190 0.0976474885 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_126933_020 0.1008339551 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
10 Hb_004117_150 0.1079758946 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
11 Hb_007479_010 0.1088468246 - - Root phototropism protein, putative [Ricinus communis]
12 Hb_003470_100 0.1104118714 - - protein binding protein, putative [Ricinus communis]
13 Hb_004007_170 0.1121464544 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_002495_090 0.1157313421 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
15 Hb_001047_180 0.1262809413 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000934_260 0.1276552908 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000703_070 0.1302872659 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
18 Hb_000302_230 0.1321561179 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_480 0.1328679868 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
20 Hb_003680_060 0.134231978 - - hypothetical protein VITISV_022322 [Vitis vinifera]

Gene co-expression network

sample Hb_004855_070 Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_004855_070--Hb_006681_020 Hb_000768_120 Hb_000768_120 Hb_004855_070--Hb_000768_120 Hb_004208_090 Hb_004208_090 Hb_004855_070--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_004855_070--Hb_006583_030 Hb_001999_260 Hb_001999_260 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_000768_120--Hb_004208_090 Hb_000768_120--Hb_001999_260 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_006583_030--Hb_001999_260 Hb_000302_230 Hb_000302_230 Hb_006583_030--Hb_000302_230 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_001999_260--Hb_000934_260 Hb_000134_040--Hb_002495_090 Hb_009838_070 Hb_009838_070 Hb_000134_040--Hb_009838_070 Hb_000134_040--Hb_007479_010 Hb_003680_060 Hb_003680_060 Hb_000134_040--Hb_003680_060 Hb_000327_260 Hb_000327_260 Hb_000134_040--Hb_000327_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27303 15.179 136.109 35.4663 6.57317 7.97666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12851 3.64282 1.17784 9.57922 97.8856

CAGE analysis