Hb_000934_260

Information

Type -
Description -
Location Contig934: 228539-230444
Sequence    

Annotation

kegg
ID rcu:RCOM_0138880
description Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative
nr
ID XP_002526176.1
description Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O49292
description PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2
trembl
ID B9SJK7
description Thylakoid lumenal 29.8 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0138880 PE=4 SV=1
Gene Ontology
ID GO:0009534
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62944: 224764-228071 , PASA_asmbl_62946: 224402-228071 , PASA_asmbl_62947: 224838-227903 , PASA_asmbl_62948: 228503-228678 , PASA_asmbl_62949: 228761-230239 , PASA_asmbl_62950: 229083-230239 , PASA_asmbl_62951: 230407-230830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_260 0.0 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_004208_090 0.077198878 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
3 Hb_000637_070 0.0788914166 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
4 Hb_000322_040 0.0937146572 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
5 Hb_001999_260 0.0942479939 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
6 Hb_050514_020 0.1086933155 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
7 Hb_006846_160 0.1117608118 - - electron transporter, putative [Ricinus communis]
8 Hb_006252_030 0.1122629977 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
9 Hb_173660_010 0.1158689799 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
10 Hb_002400_010 0.1176432741 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
11 Hb_003470_100 0.1177770045 - - protein binding protein, putative [Ricinus communis]
12 Hb_003683_030 0.1182491582 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
13 Hb_000749_200 0.1203687502 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
14 Hb_000056_310 0.1266818423 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
15 Hb_137600_010 0.1273058969 - - 50S ribosomal protein L1p, putative [Ricinus communis]
16 Hb_004855_070 0.1276552908 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
17 Hb_004117_150 0.128451076 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
18 Hb_005000_060 0.1291011871 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
19 Hb_001975_050 0.1308566392 - - Tyrosine-specific transport protein, putative [Ricinus communis]
20 Hb_005074_050 0.1314354956 - - PREDICTED: myosin-6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000934_260 Hb_000934_260 Hb_004208_090 Hb_004208_090 Hb_000934_260--Hb_004208_090 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000322_040 Hb_000322_040 Hb_000934_260--Hb_000322_040 Hb_001999_260 Hb_001999_260 Hb_000934_260--Hb_001999_260 Hb_050514_020 Hb_050514_020 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160 Hb_004208_090--Hb_001999_260 Hb_004117_150 Hb_004117_150 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_000637_070--Hb_001999_260 Hb_000637_070--Hb_004208_090 Hb_001975_050 Hb_001975_050 Hb_000637_070--Hb_001975_050 Hb_000637_070--Hb_050514_020 Hb_003470_100 Hb_003470_100 Hb_000637_070--Hb_003470_100 Hb_006252_030 Hb_006252_030 Hb_000322_040--Hb_006252_030 Hb_000056_310 Hb_000056_310 Hb_000322_040--Hb_000056_310 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050 Hb_001999_260--Hb_006681_020 Hb_006583_030 Hb_006583_030 Hb_001999_260--Hb_006583_030 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_050514_020--Hb_003470_100 Hb_050514_020--Hb_005000_060 Hb_050514_020--Hb_001999_260 Hb_009545_070 Hb_009545_070 Hb_050514_020--Hb_009545_070 Hb_002498_170 Hb_002498_170 Hb_006846_160--Hb_002498_170 Hb_006846_160--Hb_000322_040 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37808 6.90837 33.7361 7.30322 4.22614 3.51669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93208 1.24068 0.635465 1.37858 26.3531

CAGE analysis