Hb_006252_030

Information

Type -
Description -
Location Contig6252: 46495-55723
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10260g
description hypothetical protein
nr
ID XP_012077521.1
description PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LLK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17257 PE=4 SV=1
Gene Ontology
ID GO:0009507
description thioredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51650: 46538-54423 , PASA_asmbl_51651: 46678-55569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006252_030 0.0 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
2 Hb_000322_040 0.0483518597 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
3 Hb_000056_310 0.0846416611 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
4 Hb_000169_070 0.0999476439 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
5 Hb_005618_080 0.1018633344 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
6 Hb_000749_200 0.1036214583 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
7 Hb_002498_170 0.1092210805 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_000146_030 0.1116787488 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
9 Hb_000934_260 0.1122629977 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000402_020 0.1146822295 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003549_140 0.115965923 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_004208_090 0.1186519506 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_003683_030 0.1193655038 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
14 Hb_000802_050 0.1204166344 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
15 Hb_004117_150 0.1206445705 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
16 Hb_148146_010 0.1213385167 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
17 Hb_002400_010 0.1214502212 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
18 Hb_006846_160 0.1231481923 - - electron transporter, putative [Ricinus communis]
19 Hb_001386_090 0.1258555171 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
20 Hb_012653_030 0.1272203126 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006252_030 Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_006252_030--Hb_000322_040 Hb_000056_310 Hb_000056_310 Hb_006252_030--Hb_000056_310 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_002498_170 Hb_002498_170 Hb_006252_030--Hb_002498_170 Hb_000934_260 Hb_000934_260 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000056_310--Hb_000749_200 Hb_003397_030 Hb_003397_030 Hb_000169_070--Hb_003397_030 Hb_001386_090 Hb_001386_090 Hb_000169_070--Hb_001386_090 Hb_000169_070--Hb_000322_040 Hb_003470_100 Hb_003470_100 Hb_000169_070--Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_000169_070--Hb_004007_170 Hb_001959_060 Hb_001959_060 Hb_005618_080--Hb_001959_060 Hb_000402_020 Hb_000402_020 Hb_005618_080--Hb_000402_020 Hb_005116_100 Hb_005116_100 Hb_005618_080--Hb_005116_100 Hb_006829_080 Hb_006829_080 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000749_200--Hb_000934_260 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_006846_160 Hb_006846_160 Hb_002498_170--Hb_006846_160 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_002498_170--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10132 2.85489 27.7151 7.4383 3.29362 3.47487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79909 2.03684 1.08165 2.20053 20.2384

CAGE analysis