Hb_000340_410

Information

Type -
Description -
Location Contig340: 348676-349881
Sequence    

Annotation

kegg
ID rcu:RCOM_0647000
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012092328.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9SFK4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0647000 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probably inactive leucine-rich repeat receptor-like protein kinase imk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35577: 348371-349991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_410 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_002498_170 0.0997334785 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_188063_030 0.1039254275 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
4 Hb_014320_010 0.1131099424 - - PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]
5 Hb_006252_030 0.1280201288 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
6 Hb_006846_160 0.1381177818 - - electron transporter, putative [Ricinus communis]
7 Hb_000322_040 0.1420423558 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
8 Hb_000169_070 0.1527020385 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
9 Hb_000538_130 0.1559242428 - - phytoene synthase 2 [Manihot esculenta]
10 Hb_001301_330 0.1607819296 - - OTU-like cysteine protease family protein [Populus trichocarpa]
11 Hb_001975_050 0.1624741683 - - Tyrosine-specific transport protein, putative [Ricinus communis]
12 Hb_000749_200 0.1644285437 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
13 Hb_001793_020 0.165272839 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
14 Hb_006618_070 0.16650603 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
15 Hb_004052_070 0.1682221216 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
16 Hb_000934_260 0.1709448977 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000438_130 0.175528679 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
18 Hb_002400_010 0.1757557023 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
19 Hb_001386_090 0.1759371889 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
20 Hb_000123_370 0.1784677393 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000340_410 Hb_000340_410 Hb_002498_170 Hb_002498_170 Hb_000340_410--Hb_002498_170 Hb_188063_030 Hb_188063_030 Hb_000340_410--Hb_188063_030 Hb_014320_010 Hb_014320_010 Hb_000340_410--Hb_014320_010 Hb_006252_030 Hb_006252_030 Hb_000340_410--Hb_006252_030 Hb_006846_160 Hb_006846_160 Hb_000340_410--Hb_006846_160 Hb_000322_040 Hb_000322_040 Hb_000340_410--Hb_000322_040 Hb_002498_170--Hb_006846_160 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_002498_170--Hb_000322_040 Hb_188063_030--Hb_014320_010 Hb_188063_030--Hb_002498_170 Hb_001597_020 Hb_001597_020 Hb_188063_030--Hb_001597_020 Hb_188063_030--Hb_006252_030 Hb_188063_030--Hb_000322_040 Hb_003160_070 Hb_003160_070 Hb_014320_010--Hb_003160_070 Hb_000224_080 Hb_000224_080 Hb_014320_010--Hb_000224_080 Hb_160256_010 Hb_160256_010 Hb_014320_010--Hb_160256_010 Hb_000920_010 Hb_000920_010 Hb_014320_010--Hb_000920_010 Hb_006252_030--Hb_000322_040 Hb_000056_310 Hb_000056_310 Hb_006252_030--Hb_000056_310 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_000934_260 Hb_000934_260 Hb_006846_160--Hb_000934_260 Hb_006846_160--Hb_000322_040 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2882 3.40381 44.8472 18.3826 6.94498 5.99393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54897 1.8717 1.29865 0.787833 26.6629

CAGE analysis