Hb_000322_040

Information

Type -
Description -
Location Contig322: 57831-63786
Sequence    

Annotation

kegg
ID tcc:TCM_037617
description Lycopene beta/epsilon cyclase protein
nr
ID XP_012076948.1
description PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
swissprot
ID Q38932
description Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2
trembl
ID A0A067KCI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07418 PE=4 SV=1
Gene Ontology
ID GO:0016705
description lycopene epsilon chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34032: 57826-64473 , PASA_asmbl_34035: 58091-58313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_040 0.0 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
2 Hb_006252_030 0.0483518597 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
3 Hb_000934_260 0.0937146572 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000056_310 0.1014101315 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
5 Hb_004208_090 0.1016412361 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_000146_030 0.1072835185 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
7 Hb_000802_050 0.1074912241 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
8 Hb_003549_140 0.1105871503 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_004117_150 0.1124934854 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
10 Hb_005618_080 0.1143113159 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
11 Hb_006846_160 0.1158912312 - - electron transporter, putative [Ricinus communis]
12 Hb_000169_070 0.1166564203 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
13 Hb_001300_130 0.1217514923 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
14 Hb_003470_100 0.1219202718 - - protein binding protein, putative [Ricinus communis]
15 Hb_002498_170 0.1222720743 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
16 Hb_000703_070 0.1226355829 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
17 Hb_002400_010 0.1231198487 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
18 Hb_001999_260 0.1236225964 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
19 Hb_000749_200 0.1237889905 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
20 Hb_000402_020 0.125281009 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000322_040 Hb_000322_040 Hb_006252_030 Hb_006252_030 Hb_000322_040--Hb_006252_030 Hb_000934_260 Hb_000934_260 Hb_000322_040--Hb_000934_260 Hb_000056_310 Hb_000056_310 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050 Hb_006252_030--Hb_000056_310 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_002498_170 Hb_002498_170 Hb_006252_030--Hb_002498_170 Hb_000934_260--Hb_004208_090 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_001999_260 Hb_001999_260 Hb_000934_260--Hb_001999_260 Hb_050514_020 Hb_050514_020 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000056_310--Hb_000749_200 Hb_004208_090--Hb_001999_260 Hb_004117_150 Hb_004117_150 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_001300_130 Hb_001300_130 Hb_000802_050--Hb_001300_130 Hb_006829_080 Hb_006829_080 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_002232_380 Hb_002232_380 Hb_000802_050--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_000802_050--Hb_000005_130 Hb_000684_430 Hb_000684_430 Hb_000802_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.31376 5.66449 48.8757 11.4983 5.62078 6.72936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77854 3.53012 1.71562 2.66344 42.2446

CAGE analysis