Hb_004459_060

Information

Type -
Description -
Location Contig4459: 49088-50556
Sequence    

Annotation

kegg
ID rcu:RCOM_1014630
description 50S ribosomal protein L34, chloroplast precursor, putative
nr
ID XP_002522558.1
description 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LP37
description 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1
trembl
ID B9S989
description Ribosomal protein L34 OS=Ricinus communis GN=RCOM_1014630 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43003: 49106-50617
cDNA
(Sanger)
(ID:Location)		 016_L14.ab1: 49122-50564 , 021_N08.ab1: 49122-50564 , 044_O22.ab1: 49180-50530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004459_060 0.0 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
2 Hb_006620_070 0.0555763405 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
3 Hb_007694_060 0.0883508443 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
4 Hb_000146_030 0.0933612136 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
5 Hb_002411_100 0.0937877748 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
6 Hb_012545_040 0.0987823787 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000005_130 0.1007847092 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
8 Hb_000442_070 0.108712854 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
9 Hb_011114_020 0.1111687347 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
10 Hb_001405_090 0.1112376139 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
11 Hb_001047_180 0.1119523636 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003948_020 0.1130409202 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
13 Hb_005488_160 0.1152255584 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_003549_140 0.119820234 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_011519_050 0.1239918923 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
16 Hb_006829_080 0.1263933929 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
17 Hb_023732_050 0.1268612699 - - aldo-keto reductase, putative [Ricinus communis]
18 Hb_000000_180 0.1287118882 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_004117_040 0.1294017226 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
20 Hb_000802_050 0.1300919523 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004459_060 Hb_004459_060 Hb_006620_070 Hb_006620_070 Hb_004459_060--Hb_006620_070 Hb_007694_060 Hb_007694_060 Hb_004459_060--Hb_007694_060 Hb_000146_030 Hb_000146_030 Hb_004459_060--Hb_000146_030 Hb_002411_100 Hb_002411_100 Hb_004459_060--Hb_002411_100 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_000005_130 Hb_000005_130 Hb_004459_060--Hb_000005_130 Hb_001405_090 Hb_001405_090 Hb_006620_070--Hb_001405_090 Hb_006620_070--Hb_007694_060 Hb_006620_070--Hb_000005_130 Hb_006620_070--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_006620_070--Hb_000442_070 Hb_007694_060--Hb_000005_130 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_007694_060--Hb_001405_090 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_010557_010 Hb_010557_010 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_002411_100--Hb_001047_180 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000000_180 Hb_000000_180 Hb_012545_040--Hb_000000_180 Hb_005914_050 Hb_005914_050 Hb_012545_040--Hb_005914_050 Hb_012545_040--Hb_006620_070 Hb_012545_040--Hb_002411_100 Hb_012545_040--Hb_000146_030 Hb_006829_080 Hb_006829_080 Hb_000005_130--Hb_006829_080 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_001959_060 Hb_001959_060 Hb_000005_130--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0814 10.1273 232.255 76.1128 15.118 19.1345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2769 53.0321 15.2542 8.16816 241.458

CAGE analysis