Hb_000402_020

Information

Type -
Description -
Location Contig402: 24013-26878
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19280g
description POPTRDRAFT_420703; hypothetical protein
nr
ID XP_012085439.1
description PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q3ED65
description 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2
trembl
ID B9HLS4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19280g PE=3 SV=2
Gene Ontology
ID GO:0052624
description 2-phytyl- -beta-naphthoquinone chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39909: 23995-26874 , PASA_asmbl_39910: 23992-26751 , PASA_asmbl_39911: 24264-26740
cDNA
(Sanger)
(ID:Location)		 017_E16.ab1: 23995-25421

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_020 0.0 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_005618_080 0.0751996034 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
3 Hb_005116_100 0.0900626947 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
4 Hb_001959_060 0.0935072173 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
5 Hb_003752_090 0.0948105879 - - chitinase, putative [Ricinus communis]
6 Hb_006829_080 0.1005389553 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
7 Hb_000056_310 0.1019973807 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
8 Hb_148146_010 0.1039004041 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
9 Hb_001649_030 0.1049759171 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
10 Hb_000146_030 0.1052904624 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
11 Hb_006130_020 0.1070981988 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
12 Hb_000212_250 0.1091075282 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009288_040 0.1099707151 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
14 Hb_003664_030 0.1121344057 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
15 Hb_003020_250 0.1132100893 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
16 Hb_086122_010 0.1138240024 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
17 Hb_006252_030 0.1146822295 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
18 Hb_002005_040 0.1148540219 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_172632_060 0.1152706613 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
20 Hb_011114_020 0.1155249903 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000402_020 Hb_000402_020 Hb_005618_080 Hb_005618_080 Hb_000402_020--Hb_005618_080 Hb_005116_100 Hb_005116_100 Hb_000402_020--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_000402_020--Hb_001959_060 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_006829_080 Hb_006829_080 Hb_000402_020--Hb_006829_080 Hb_000056_310 Hb_000056_310 Hb_000402_020--Hb_000056_310 Hb_005618_080--Hb_001959_060 Hb_005618_080--Hb_005116_100 Hb_005618_080--Hb_000056_310 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_002005_040 Hb_002005_040 Hb_005116_100--Hb_002005_040 Hb_148146_010 Hb_148146_010 Hb_005116_100--Hb_148146_010 Hb_004055_160 Hb_004055_160 Hb_005116_100--Hb_004055_160 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_001959_060--Hb_006829_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_003752_090--Hb_001649_030 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56414 2.63284 15.1769 5.1112 0.964354 2.14396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28656 2.49805 0.680294 2.37659 14.0333

CAGE analysis