Hb_009288_040

Information

Type -
Description -
Location Contig9288: 20246-23192
Sequence    

Annotation

kegg
ID rcu:RCOM_1502880
description pterin-4-alpha-carbinolamine dehydratase, putative
nr
ID XP_012090533.1
description PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
swissprot
ID B0JQV0
description Putative pterin-4-alpha-carbinolamine dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_39970 PE=3 SV=1
trembl
ID A0A067JSH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26330 PE=4 SV=1
Gene Ontology
ID GO:0008124
description pterin-4-alpha-carbinolamine dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62792: 20459-23120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009288_040 0.0 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
2 Hb_003752_090 0.0594450584 - - chitinase, putative [Ricinus communis]
3 Hb_005665_090 0.0717073985 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
4 Hb_012779_080 0.0762527146 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
5 Hb_010620_050 0.0813169638 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
6 Hb_000094_100 0.0894580287 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
7 Hb_000465_440 0.0908014598 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
8 Hb_000108_020 0.0910258129 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
9 Hb_002107_050 0.0912133344 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
10 Hb_003994_080 0.0920536129 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
11 Hb_138585_030 0.0922508316 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_025194_090 0.0931366774 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
13 Hb_001649_030 0.0952959733 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
14 Hb_003071_030 0.0967476167 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
15 Hb_000358_040 0.0973065188 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
16 Hb_002928_030 0.0974068579 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
17 Hb_160271_010 0.0979028763 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
18 Hb_000645_180 0.098251031 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
19 Hb_000579_040 0.0988365828 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
20 Hb_000320_190 0.1004131941 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_009288_040 Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_009288_040--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_005665_090--Hb_012779_080 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050 Hb_012779_080--Hb_000320_190 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_010620_050 Hb_002107_050 Hb_002107_050 Hb_010620_050--Hb_002107_050 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_000094_100--Hb_012779_080 Hb_000094_100--Hb_002915_010 Hb_000094_100--Hb_005665_090 Hb_000094_100--Hb_010620_050 Hb_000094_100--Hb_138585_030 Hb_000665_270 Hb_000665_270 Hb_000465_440--Hb_000665_270 Hb_000465_440--Hb_003752_090 Hb_000336_200 Hb_000336_200 Hb_000465_440--Hb_000336_200 Hb_001793_020 Hb_001793_020 Hb_000465_440--Hb_001793_020 Hb_000465_440--Hb_001649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.55272 8.29692 30.6581 17.121 5.35662 6.66807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47053 7.64903 3.77097 7.60474 32.2196

CAGE analysis