Hb_002759_120

Information

Type -
Description -
Location Contig2759: 119653-123226
Sequence    

Annotation

kegg
ID rcu:RCOM_0394460
description hypothetical protein
nr
ID XP_002531411.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZJ2
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0394460 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna-binding family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003752_090 0.0882570361 - - chitinase, putative [Ricinus communis]
3 Hb_000096_190 0.0931515463 - - unknown [Lotus japonicus]
4 Hb_000566_010 0.095761533 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
5 Hb_042083_040 0.0969749846 - - conserved hypothetical protein [Ricinus communis]
6 Hb_158092_100 0.0999981201 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
7 Hb_003994_080 0.1033532872 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
8 Hb_007904_060 0.1034212973 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
9 Hb_000749_020 0.1063079647 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
10 Hb_009288_040 0.1075860566 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
11 Hb_000049_180 0.109505619 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
12 Hb_000069_360 0.113173041 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001628_120 0.1137956395 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
14 Hb_001269_500 0.1152820057 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
15 Hb_032631_070 0.1154865287 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
16 Hb_000152_490 0.1175499921 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
17 Hb_000473_050 0.1193637591 - - chromatin regulatory protein sir2, putative [Ricinus communis]
18 Hb_009687_020 0.1200957756 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
19 Hb_000951_120 0.1206711359 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
20 Hb_001369_100 0.1213651599 - - hypothetical protein JCGZ_26280 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_120 Hb_002759_120 Hb_003752_090 Hb_003752_090 Hb_002759_120--Hb_003752_090 Hb_000096_190 Hb_000096_190 Hb_002759_120--Hb_000096_190 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_042083_040 Hb_042083_040 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_000049_180 Hb_000049_180 Hb_000096_190--Hb_000049_180 Hb_000096_190--Hb_042083_040 Hb_000049_160 Hb_000049_160 Hb_000096_190--Hb_000049_160 Hb_000962_070 Hb_000962_070 Hb_000096_190--Hb_000962_070 Hb_002182_020 Hb_002182_020 Hb_000096_190--Hb_002182_020 Hb_000069_360 Hb_000069_360 Hb_000566_010--Hb_000069_360 Hb_000566_010--Hb_003994_080 Hb_021409_070 Hb_021409_070 Hb_000566_010--Hb_021409_070 Hb_000566_010--Hb_003752_090 Hb_000566_010--Hb_005665_090 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_001976_030 Hb_001976_030 Hb_042083_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_042083_040--Hb_001628_120 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_042083_040--Hb_000049_180 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36425 2.89848 15.7843 13.3531 2.0546 2.72255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.21415 5.41642 2.22755 3.43954 18.1444

CAGE analysis