Hb_000962_070

Information

Type -
Description -
Location Contig962: 137953-143567
Sequence    

Annotation

kegg
ID rcu:RCOM_0503680
description hypothetical protein
nr
ID XP_012087765.1
description PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q8S9M1
description Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thaliana GN=PAP13 PE=2 SV=2
trembl
ID G9F9P3
description Putative plastid-lipid-associated protein (Fragment) OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63755: 137960-143600 , PASA_asmbl_63756: 141205-141753 , PASA_asmbl_63757: 142240-142688 , PASA_asmbl_63758: 139628-140020
cDNA
(Sanger)
(ID:Location)		 002_C18.ab1: 138016-141011 , 011_K02.ab1: 138016-141022

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000962_070 0.0 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000096_190 0.1005122891 - - unknown [Lotus japonicus]
3 Hb_042083_040 0.1066626594 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000796_150 0.1091526562 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
5 Hb_000638_070 0.113190704 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
6 Hb_000181_350 0.1209624578 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
7 Hb_000057_110 0.1211583308 - - PREDICTED: kinesin-13A [Jatropha curcas]
8 Hb_007101_110 0.1227084242 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
9 Hb_174865_040 0.1262623683 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
10 Hb_031527_110 0.127343914 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
11 Hb_000049_160 0.1276333966 - - tyrosine decarboxylase family protein [Populus trichocarpa]
12 Hb_000256_080 0.1279339438 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
13 Hb_077549_010 0.1281778346 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
14 Hb_000152_440 0.1289159718 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
15 Hb_000200_300 0.1306867999 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
16 Hb_000665_180 0.1308914536 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
17 Hb_001976_030 0.1337904864 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
18 Hb_156850_100 0.1354797218 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
19 Hb_008566_040 0.1359198304 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
20 Hb_011486_060 0.1362434248 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000962_070 Hb_000962_070 Hb_000096_190 Hb_000096_190 Hb_000962_070--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000962_070--Hb_042083_040 Hb_000796_150 Hb_000796_150 Hb_000962_070--Hb_000796_150 Hb_000638_070 Hb_000638_070 Hb_000962_070--Hb_000638_070 Hb_000181_350 Hb_000181_350 Hb_000962_070--Hb_000181_350 Hb_000057_110 Hb_000057_110 Hb_000962_070--Hb_000057_110 Hb_000049_180 Hb_000049_180 Hb_000096_190--Hb_000049_180 Hb_002759_120 Hb_002759_120 Hb_000096_190--Hb_002759_120 Hb_000096_190--Hb_042083_040 Hb_000049_160 Hb_000049_160 Hb_000096_190--Hb_000049_160 Hb_002182_020 Hb_002182_020 Hb_000096_190--Hb_002182_020 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_001976_030 Hb_001976_030 Hb_042083_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_042083_040--Hb_001628_120 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_042083_040--Hb_000049_180 Hb_185830_060 Hb_185830_060 Hb_000796_150--Hb_185830_060 Hb_000072_300 Hb_000072_300 Hb_000796_150--Hb_000072_300 Hb_000359_290 Hb_000359_290 Hb_000796_150--Hb_000359_290 Hb_000665_180 Hb_000665_180 Hb_000796_150--Hb_000665_180 Hb_011671_260 Hb_011671_260 Hb_000796_150--Hb_011671_260 Hb_000140_340 Hb_000140_340 Hb_000796_150--Hb_000140_340 Hb_000638_070--Hb_000665_180 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390 Hb_000181_350--Hb_001663_040 Hb_007101_110 Hb_007101_110 Hb_000181_350--Hb_007101_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000062_330 Hb_000062_330 Hb_000181_350--Hb_000062_330 Hb_000057_110--Hb_000684_030 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000012_080 Hb_000012_080 Hb_000057_110--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_000057_110--Hb_006829_060 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.46266 6.55637 32.8266 44.7526 6.84012 9.6922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8022 18.9135 8.74235 5.76678 29.8776

CAGE analysis