Hb_011486_060

Information

Type -
Description -
Location Contig11486: 41517-45781
Sequence    

Annotation

kegg
ID rcu:RCOM_1381640
description hypothetical protein
nr
ID XP_002522056.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2Y6
description Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1
trembl
ID B9S7U0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1381640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04488: 41614-45774 , PASA_asmbl_04489: 42976-43143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011486_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000638_070 0.0905021516 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
3 Hb_003058_100 0.0944961595 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
4 Hb_002740_080 0.0952518007 - - flap endonuclease-1, putative [Ricinus communis]
5 Hb_000012_080 0.0963993986 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
6 Hb_000057_110 0.0973612423 - - PREDICTED: kinesin-13A [Jatropha curcas]
7 Hb_000389_030 0.0974050695 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
8 Hb_002193_060 0.0977434394 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
9 Hb_008725_270 0.10334996 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
10 Hb_019654_020 0.1035720494 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
11 Hb_000665_180 0.1064583458 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
12 Hb_004126_040 0.1089372802 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000765_060 0.1110208881 - - Alcohol dehydrogenase-like 6 [Glycine soja]
14 Hb_000375_300 0.1116681786 - - PREDICTED: cyanate hydratase [Jatropha curcas]
15 Hb_003929_180 0.1122446753 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
16 Hb_000367_180 0.112562313 - - Heparanase-2, putative [Ricinus communis]
17 Hb_000007_090 0.114598105 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
18 Hb_000395_110 0.1167537032 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_003605_020 0.1167983028 - - exocyst complex component sec6, putative [Ricinus communis]
20 Hb_000389_110 0.118047045 - - adenosine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011486_060 Hb_011486_060 Hb_000638_070 Hb_000638_070 Hb_011486_060--Hb_000638_070 Hb_003058_100 Hb_003058_100 Hb_011486_060--Hb_003058_100 Hb_002740_080 Hb_002740_080 Hb_011486_060--Hb_002740_080 Hb_000012_080 Hb_000012_080 Hb_011486_060--Hb_000012_080 Hb_000057_110 Hb_000057_110 Hb_011486_060--Hb_000057_110 Hb_000389_030 Hb_000389_030 Hb_011486_060--Hb_000389_030 Hb_000665_180 Hb_000665_180 Hb_000638_070--Hb_000665_180 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_002837_040 Hb_002837_040 Hb_003058_100--Hb_002837_040 Hb_000645_070 Hb_000645_070 Hb_003058_100--Hb_000645_070 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_001279_190 Hb_001279_190 Hb_002740_080--Hb_001279_190 Hb_000160_070 Hb_000160_070 Hb_002740_080--Hb_000160_070 Hb_000072_300 Hb_000072_300 Hb_002740_080--Hb_000072_300 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_001227_120 Hb_001227_120 Hb_002740_080--Hb_001227_120 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000012_080--Hb_000665_180 Hb_000012_080--Hb_000395_110 Hb_000684_030 Hb_000684_030 Hb_000057_110--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000057_110--Hb_006829_060 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_000256_230 Hb_000256_230 Hb_000389_030--Hb_000256_230 Hb_001021_010 Hb_001021_010 Hb_000389_030--Hb_001021_010 Hb_004126_040 Hb_004126_040 Hb_000389_030--Hb_004126_040 Hb_000665_170 Hb_000665_170 Hb_000389_030--Hb_000665_170 Hb_004525_040 Hb_004525_040 Hb_000389_030--Hb_004525_040 Hb_000009_060 Hb_000009_060 Hb_000389_030--Hb_000009_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.41719 4.2351 21.0171 30.4056 7.83826 5.0951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.97764 9.88649 6.30655 11.9638 17.7409

CAGE analysis