Hb_001188_100

Information

Type -
Description -
Location Contig1188: 99560-102182
Sequence    

Annotation

kegg
ID rcu:RCOM_1399380
description hypothetical protein
nr
ID KDP44101.1
description hypothetical protein JCGZ_05568 [Jatropha curcas]
swissprot
ID Q9FKK6
description Exonuclease V, chloroplastic OS=Arabidopsis thaliana GN=At5g60370 PE=2 SV=1
trembl
ID A0A067L6K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05568 PE=4 SV=1
Gene Ontology
ID GO:0045145
description exonuclease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05570: 99502-100082 , PASA_asmbl_05571: 99609-100697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001188_100 0.0 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
2 Hb_000012_080 0.0884295316 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
3 Hb_006829_060 0.1104214672 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
4 Hb_000152_440 0.1107796453 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
5 Hb_005062_060 0.1119738958 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
6 Hb_002272_240 0.1147528437 - - catalytic, putative [Ricinus communis]
7 Hb_000796_150 0.1154839013 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
8 Hb_008725_270 0.1163306442 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
9 Hb_001799_160 0.1164404128 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000665_180 0.1183931683 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
11 Hb_000395_110 0.1187570827 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
12 Hb_005074_040 0.1203654739 - - ATP binding protein, putative [Ricinus communis]
13 Hb_013726_050 0.1204744227 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
14 Hb_000057_110 0.1211106227 - - PREDICTED: kinesin-13A [Jatropha curcas]
15 Hb_003687_080 0.1213082613 - - PREDICTED: casein kinase I-like [Jatropha curcas]
16 Hb_002740_080 0.1220430327 - - flap endonuclease-1, putative [Ricinus communis]
17 Hb_005511_130 0.1244724856 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
18 Hb_000007_090 0.1252494296 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
19 Hb_116349_120 0.1254173705 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_002942_230 0.1261268393 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]

Gene co-expression network

sample Hb_001188_100 Hb_001188_100 Hb_000012_080 Hb_000012_080 Hb_001188_100--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_001188_100--Hb_006829_060 Hb_000152_440 Hb_000152_440 Hb_001188_100--Hb_000152_440 Hb_005062_060 Hb_005062_060 Hb_001188_100--Hb_005062_060 Hb_002272_240 Hb_002272_240 Hb_001188_100--Hb_002272_240 Hb_000796_150 Hb_000796_150 Hb_001188_100--Hb_000796_150 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_000979_130 Hb_000979_130 Hb_006829_060--Hb_000979_130 Hb_001976_030 Hb_001976_030 Hb_006829_060--Hb_001976_030 Hb_006829_060--Hb_000057_110 Hb_002687_160 Hb_002687_160 Hb_006829_060--Hb_002687_160 Hb_019654_020 Hb_019654_020 Hb_006829_060--Hb_019654_020 Hb_000086_210 Hb_000086_210 Hb_000152_440--Hb_000086_210 Hb_000152_440--Hb_000012_080 Hb_000935_040 Hb_000935_040 Hb_000152_440--Hb_000935_040 Hb_000139_300 Hb_000139_300 Hb_000152_440--Hb_000139_300 Hb_000152_440--Hb_005074_040 Hb_001579_300 Hb_001579_300 Hb_000152_440--Hb_001579_300 Hb_022693_130 Hb_022693_130 Hb_005062_060--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_005062_060--Hb_002053_050 Hb_160271_010 Hb_160271_010 Hb_005062_060--Hb_160271_010 Hb_005656_070 Hb_005656_070 Hb_005062_060--Hb_005656_070 Hb_000107_250 Hb_000107_250 Hb_005062_060--Hb_000107_250 Hb_000453_030 Hb_000453_030 Hb_005062_060--Hb_000453_030 Hb_013726_050 Hb_013726_050 Hb_002272_240--Hb_013726_050 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_007919_110 Hb_007919_110 Hb_002272_240--Hb_007919_110 Hb_006120_050 Hb_006120_050 Hb_002272_240--Hb_006120_050 Hb_002304_050 Hb_002304_050 Hb_002272_240--Hb_002304_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020 Hb_185830_060 Hb_185830_060 Hb_000796_150--Hb_185830_060 Hb_000072_300 Hb_000072_300 Hb_000796_150--Hb_000072_300 Hb_000359_290 Hb_000359_290 Hb_000796_150--Hb_000359_290 Hb_000796_150--Hb_000665_180 Hb_011671_260 Hb_011671_260 Hb_000796_150--Hb_011671_260 Hb_000140_340 Hb_000140_340 Hb_000796_150--Hb_000140_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24492 3.44341 9.55242 10.6319 2.21378 2.42799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70083 2.67572 4.22223 2.44031 7.3208

CAGE analysis