Hb_000012_080

Information

Type -
Description -
Location Contig12: 162100-168191
Sequence    

Annotation

kegg
ID rcu:RCOM_0798520
description Clathrin interactor, putative
nr
ID XP_012077334.1
description PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
swissprot
ID Q8VY07
description Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1
trembl
ID A0A067KQP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07705 PE=4 SV=1
Gene Ontology
ID GO:0005884
description clathrin interactor epsin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05976: 162109-168123 , PASA_asmbl_05977: 163900-164118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_080 0.0 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
2 Hb_006829_060 0.073799195 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
3 Hb_000057_110 0.0864153282 - - PREDICTED: kinesin-13A [Jatropha curcas]
4 Hb_001188_100 0.0884295316 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
5 Hb_005074_040 0.0885559223 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000665_180 0.0935598312 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
7 Hb_000395_110 0.0939421826 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
8 Hb_000935_040 0.0947266602 - - Uncharacterized protein isoform 2 [Theobroma cacao]
9 Hb_003929_180 0.0960935283 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
10 Hb_011486_060 0.0963993986 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002007_320 0.0966871887 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
12 Hb_004223_140 0.0980996678 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_008725_270 0.0985309325 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
14 Hb_000152_440 0.1008188056 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
15 Hb_002193_060 0.101952451 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
16 Hb_000638_070 0.1081356943 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
17 Hb_000979_130 0.1102331962 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
18 Hb_021943_090 0.1111664145 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
19 Hb_000049_160 0.1118404488 - - tyrosine decarboxylase family protein [Populus trichocarpa]
20 Hb_002687_160 0.1122140105 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_080 Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_000979_130 Hb_000979_130 Hb_006829_060--Hb_000979_130 Hb_001976_030 Hb_001976_030 Hb_006829_060--Hb_001976_030 Hb_006829_060--Hb_000057_110 Hb_002687_160 Hb_002687_160 Hb_006829_060--Hb_002687_160 Hb_019654_020 Hb_019654_020 Hb_006829_060--Hb_019654_020 Hb_000684_030 Hb_000684_030 Hb_000057_110--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_001188_100--Hb_006829_060 Hb_000152_440 Hb_000152_440 Hb_001188_100--Hb_000152_440 Hb_005062_060 Hb_005062_060 Hb_001188_100--Hb_005062_060 Hb_002272_240 Hb_002272_240 Hb_001188_100--Hb_002272_240 Hb_000796_150 Hb_000796_150 Hb_001188_100--Hb_000796_150 Hb_014497_010 Hb_014497_010 Hb_005074_040--Hb_014497_010 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000665_180--Hb_000395_110 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_010672_020 Hb_010672_020 Hb_000395_110--Hb_010672_020 Hb_000395_110--Hb_185830_060 Hb_000395_110--Hb_000979_130 Hb_000395_110--Hb_002193_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17707 8.68487 41.2015 54.8941 8.28249 7.2103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.16158 11.7485 18.3135 16.437 32.5128

CAGE analysis