Hb_000008_340

Information

Type -
Description -
Location Contig8: 433069-438408
Sequence    

Annotation

kegg
ID rcu:RCOM_0154010
description Aquaporin PIP2.1, putative
nr
ID XP_012064821.1
description PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
swissprot
ID Q6K215
description Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1
trembl
ID A0A067L9Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05520 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable aquaporin pip2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58692: 433098-433324 , PASA_asmbl_58693: 438007-438409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_340 0.0 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
2 Hb_000665_180 0.0765883462 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
3 Hb_000860_060 0.0921682742 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
4 Hb_000585_110 0.0996235866 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
5 Hb_000007_090 0.0999087204 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
6 Hb_002955_020 0.1003845722 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
7 Hb_000049_160 0.1023271168 - - tyrosine decarboxylase family protein [Populus trichocarpa]
8 Hb_002249_080 0.1035839634 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
9 Hb_000367_180 0.1045619854 - - Heparanase-2, putative [Ricinus communis]
10 Hb_185830_060 0.1076629606 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
11 Hb_001619_060 0.10902171 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
12 Hb_000399_060 0.1100490162 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
13 Hb_002687_200 0.1101306528 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000920_310 0.1126772788 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_000049_180 0.1128415675 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
16 Hb_000342_170 0.1131973917 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
17 Hb_000395_110 0.1133960855 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
18 Hb_008025_010 0.1141000153 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
19 Hb_003058_100 0.1142351509 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
20 Hb_019654_020 0.1142835664 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_000008_340 Hb_000008_340 Hb_000665_180 Hb_000665_180 Hb_000008_340--Hb_000665_180 Hb_000860_060 Hb_000860_060 Hb_000008_340--Hb_000860_060 Hb_000585_110 Hb_000585_110 Hb_000008_340--Hb_000585_110 Hb_000007_090 Hb_000007_090 Hb_000008_340--Hb_000007_090 Hb_002955_020 Hb_002955_020 Hb_000008_340--Hb_002955_020 Hb_000049_160 Hb_000049_160 Hb_000008_340--Hb_000049_160 Hb_000395_110 Hb_000395_110 Hb_000665_180--Hb_000395_110 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_000665_180--Hb_002955_020 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060 Hb_000860_060--Hb_002955_020 Hb_000920_310 Hb_000920_310 Hb_000860_060--Hb_000920_310 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_000007_090--Hb_002249_080 Hb_008725_270 Hb_008725_270 Hb_000007_090--Hb_008725_270 Hb_000007_090--Hb_019654_020 Hb_002955_020--Hb_000920_310 Hb_002955_020--Hb_000049_160 Hb_001486_040 Hb_001486_040 Hb_002955_020--Hb_001486_040 Hb_002955_020--Hb_000638_070 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_000049_180 Hb_000049_180 Hb_000049_160--Hb_000049_180 Hb_000096_190 Hb_000096_190 Hb_000049_160--Hb_000096_190 Hb_000049_160--Hb_000665_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5238 49.6613 136.28 213.198 36.4395 44.783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.2876 35.9131 40.7613 78.8111 179.527

CAGE analysis