Hb_000860_060

Information

Type transcription factor
Description TF Family: SBP
Location Contig860: 119929-123365
Sequence    

Annotation

kegg
ID rcu:RCOM_1620060
description LIGULELESS1 protein, putative
nr
ID XP_012067818.1
description PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
swissprot
ID Q94JW8
description Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2
trembl
ID A0A067KYV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15739 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60794: 118969-123323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000860_060 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
2 Hb_002955_020 0.0893331042 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
3 Hb_000920_310 0.0920551793 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_000008_340 0.0921682742 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
5 Hb_000342_170 0.0949456616 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
6 Hb_000320_340 0.1085628233 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
7 Hb_000390_190 0.108661945 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000007_090 0.1115723503 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
9 Hb_000665_180 0.1134958433 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
10 Hb_000629_070 0.1174089655 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
11 Hb_000510_150 0.1191877779 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
12 Hb_001486_040 0.1192511836 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
13 Hb_000189_480 0.1195232473 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
14 Hb_002249_080 0.1223205493 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
15 Hb_000000_310 0.1232906545 - - metalloendopeptidase, putative [Ricinus communis]
16 Hb_000585_110 0.1245739346 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
17 Hb_000399_060 0.1257311135 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
18 Hb_000395_110 0.125805322 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_008025_010 0.1259942901 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
20 Hb_000300_090 0.1263607943 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000860_060 Hb_000860_060 Hb_002955_020 Hb_002955_020 Hb_000860_060--Hb_002955_020 Hb_000920_310 Hb_000920_310 Hb_000860_060--Hb_000920_310 Hb_000008_340 Hb_000008_340 Hb_000860_060--Hb_000008_340 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_002955_020--Hb_000920_310 Hb_000665_180 Hb_000665_180 Hb_002955_020--Hb_000665_180 Hb_000049_160 Hb_000049_160 Hb_002955_020--Hb_000049_160 Hb_001486_040 Hb_001486_040 Hb_002955_020--Hb_001486_040 Hb_000638_070 Hb_000638_070 Hb_002955_020--Hb_000638_070 Hb_000684_390 Hb_000684_390 Hb_000920_310--Hb_000684_390 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_004306_110 Hb_004306_110 Hb_000920_310--Hb_004306_110 Hb_000000_310 Hb_000000_310 Hb_000920_310--Hb_000000_310 Hb_000008_340--Hb_000665_180 Hb_000585_110 Hb_000585_110 Hb_000008_340--Hb_000585_110 Hb_000007_090 Hb_000007_090 Hb_000008_340--Hb_000007_090 Hb_000008_340--Hb_002955_020 Hb_000008_340--Hb_000049_160 Hb_000510_150 Hb_000510_150 Hb_000342_170--Hb_000510_150 Hb_132082_010 Hb_132082_010 Hb_000342_170--Hb_132082_010 Hb_000665_170 Hb_000665_170 Hb_000342_170--Hb_000665_170 Hb_003777_030 Hb_003777_030 Hb_000342_170--Hb_003777_030 Hb_002687_200 Hb_002687_200 Hb_000342_170--Hb_002687_200 Hb_000399_060 Hb_000399_060 Hb_000320_340--Hb_000399_060 Hb_000189_480 Hb_000189_480 Hb_000320_340--Hb_000189_480 Hb_008406_180 Hb_008406_180 Hb_000320_340--Hb_008406_180 Hb_001157_230 Hb_001157_230 Hb_000320_340--Hb_001157_230 Hb_014361_060 Hb_014361_060 Hb_000320_340--Hb_014361_060 Hb_000390_190--Hb_004306_110 Hb_000062_400 Hb_000062_400 Hb_000390_190--Hb_000062_400 Hb_000390_190--Hb_000189_480 Hb_001976_030 Hb_001976_030 Hb_000390_190--Hb_001976_030 Hb_000390_190--Hb_000920_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58882 2.15662 5.72577 9.83904 0.83869 2.56918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.046 1.59167 1.42138 3.37086 8.49928

CAGE analysis