Hb_000000_310

Information

Type -
Description -
Location Contig0: 530651-537301
Sequence    

Annotation

kegg
ID rcu:RCOM_1593600
description metalloendopeptidase, putative (EC:3.4.24.36)
nr
ID XP_002510341.1
description metalloendopeptidase, putative [Ricinus communis]
swissprot
ID Q29AK2
description Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura GN=GA17800 PE=3 SV=1
trembl
ID B9R7P8
description Metalloendopeptidase, putative OS=Ricinus communis GN=RCOM_1593600 PE=4 SV=1
Gene Ontology
ID GO:0016020
description leishmanolysin-like peptidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00076: 530708-537313 , PASA_asmbl_00077: 531687-531784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_310 0.0 - - metalloendopeptidase, putative [Ricinus communis]
2 Hb_003682_070 0.0618714137 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
3 Hb_000107_250 0.0717016784 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
4 Hb_000300_510 0.0773687224 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
5 Hb_000684_390 0.0791818362 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
6 Hb_000120_860 0.0801553845 - - nucellin, putative [Ricinus communis]
7 Hb_000922_060 0.0832653569 - - kinesin light chain, putative [Ricinus communis]
8 Hb_026549_070 0.097362583 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
9 Hb_000270_660 0.1008210233 - - purine permease, putative [Ricinus communis]
10 Hb_000920_310 0.1020911641 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_002249_080 0.1026014745 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
12 Hb_116702_010 0.1027703002 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
13 Hb_005192_010 0.1040572492 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
14 Hb_000762_110 0.1046417499 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
15 Hb_000815_230 0.1056636706 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004735_020 0.1059883819 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
17 Hb_003746_010 0.1061622764 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003847_040 0.1094087253 - - adenosine diphosphatase, putative [Ricinus communis]
19 Hb_001009_260 0.1108888061 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
20 Hb_000342_170 0.1112119291 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]

Gene co-expression network

sample Hb_000000_310 Hb_000000_310 Hb_003682_070 Hb_003682_070 Hb_000000_310--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000000_310--Hb_000107_250 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000684_390 Hb_000684_390 Hb_000000_310--Hb_000684_390 Hb_000120_860 Hb_000120_860 Hb_000000_310--Hb_000120_860 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060 Hb_003682_070--Hb_000922_060 Hb_003682_070--Hb_000300_510 Hb_003682_070--Hb_000107_250 Hb_003682_070--Hb_000120_860 Hb_004735_020 Hb_004735_020 Hb_003682_070--Hb_004735_020 Hb_073973_120 Hb_073973_120 Hb_000107_250--Hb_073973_120 Hb_022693_130 Hb_022693_130 Hb_000107_250--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_000107_250--Hb_002053_050 Hb_004705_160 Hb_004705_160 Hb_000107_250--Hb_004705_160 Hb_005192_010 Hb_005192_010 Hb_000300_510--Hb_005192_010 Hb_000300_510--Hb_000922_060 Hb_001421_090 Hb_001421_090 Hb_000300_510--Hb_001421_090 Hb_000300_510--Hb_000684_390 Hb_000920_310 Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_000684_390--Hb_003682_070 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_001009_260 Hb_001009_260 Hb_000120_860--Hb_001009_260 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_000922_060--Hb_005192_010 Hb_183086_030 Hb_183086_030 Hb_000922_060--Hb_183086_030 Hb_022250_010 Hb_022250_010 Hb_000922_060--Hb_022250_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.60589 14.214 21.3191 33.22 6.97007 7.44869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.97939 4.60846 7.36777 8.88071 38.7178

CAGE analysis