Hb_004735_020

Information

Type -
Description -
Location Contig4735: 37967-39797
Sequence    

Annotation

kegg
ID rcu:RCOM_0220570
description RNA binding protein, putative
nr
ID XP_012078718.1
description PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13284 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44445: 37972-38194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004735_020 0.0 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
2 Hb_001009_260 0.0861485537 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
3 Hb_000120_860 0.0900264986 - - nucellin, putative [Ricinus communis]
4 Hb_003682_070 0.0902145493 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
5 Hb_000629_070 0.0980523268 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
6 Hb_010344_030 0.0998638736 - - conserved hypothetical protein [Ricinus communis]
7 Hb_130589_010 0.1044361868 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_000200_350 0.105794812 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
9 Hb_000000_310 0.1059883819 - - metalloendopeptidase, putative [Ricinus communis]
10 Hb_000815_230 0.1077707259 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001421_090 0.1097150524 - - hypothetical protein RCOM_1278080 [Ricinus communis]
12 Hb_003142_010 0.1114332969 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
13 Hb_000172_350 0.1121150827 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
14 Hb_000934_110 0.1125269546 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
15 Hb_005250_010 0.1127169443 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
16 Hb_011364_020 0.1131405833 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_000062_400 0.1133456134 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001882_020 0.1147344011 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
19 Hb_001080_070 0.1149082138 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
20 Hb_009020_040 0.1150749118 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004735_020 Hb_004735_020 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_000120_860--Hb_003682_070 Hb_003682_070--Hb_000000_310 Hb_000922_060 Hb_000922_060 Hb_003682_070--Hb_000922_060 Hb_000300_510 Hb_000300_510 Hb_003682_070--Hb_000300_510 Hb_000107_250 Hb_000107_250 Hb_003682_070--Hb_000107_250 Hb_003142_010 Hb_003142_010 Hb_000629_070--Hb_003142_010 Hb_011364_020 Hb_011364_020 Hb_000629_070--Hb_011364_020 Hb_001421_090 Hb_001421_090 Hb_000629_070--Hb_001421_090 Hb_000860_060 Hb_000860_060 Hb_000629_070--Hb_000860_060 Hb_000629_070--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060 Hb_130589_010--Hb_000120_860 Hb_130589_010--Hb_002150_020 Hb_000684_390 Hb_000684_390 Hb_130589_010--Hb_000684_390 Hb_000920_310 Hb_000920_310 Hb_130589_010--Hb_000920_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04209 1.87082 2.7129 4.66053 1.34914 1.91145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39755 0.997194 1.1034 1.69505 8.7597

CAGE analysis